PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV39049.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family TCP
Protein Properties Length: 421aa    MW: 45743.3 Da    PI: 9.498
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV39049.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP118.77.1e-37742122129
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssaseceaesssssasnsssg....... 88 
                  g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWLl++a  +i el+       + +++ + ++e++ss++     g       
  KZV39049.1  74 SGGKDRHSKVLTSKGLRDRRVRLSVNTAIQFYDLQDRLGYDQPSKAVEWLLKAAASSISELPPMnslfpD-TPK-QLSDEKRSSNG-----Gldlvepe 165
                 689************************************************************9443321.111.11222222222.....24466677 PP

         TCP  89 ....kaaksaa.kskksqksaasalnlak.esrakarararertrek 129
                     ++++++  +s+ s++s++s l+l++ esr kar+ra+ r +  
  KZV39049.1 166 idrhQQMTKSSaCSSTSETSKSSGLSLSRsESRIKARERAKVRVAAG 212
                 7788444444449999***********************98765544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.4E-3975210IPR005333Transcription factor, TCP
PROSITE profilePS5136931.81776134IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MDLDEIQRKF PRISNGDGKL ESPKVVYGKK MEGQFEDEED GKSKRGGGGV DLVGGVGGFY  60
GWASSRIVRV SRASGGKDRH SKVLTSKGLR DRRVRLSVNT AIQFYDLQDR LGYDQPSKAV  120
EWLLKAAASS ISELPPMNSL FPDTPKQLSD EKRSSNGGLD LVEPEIDRHQ QMTKSSACSS  180
TSETSKSSGL SLSRSESRIK ARERAKVRVA AGKEKEKENE IASLNPLSHT TSFTELLSAG  240
MNSNTSPTRP PNSNESNFFQ KSRLWSSSAP LEYFSSGPGQ IHFANSFTSM AGDNQTEIQQ  300
FSFVPDHFVP PSNSNSNHNS NDYNLNFTIS SSANSSGLAA YNGGTLQSNS TSPSLSPYNY  360
LQRFSLIDGS SSPSIFLGTA APVESHHQFL PGFDARLQLS YGDANANNSS RHASQKGKGK  420
N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-2281135155Putative transcription factor PCF6
5zkt_B1e-2281135155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). Participates in ovule develpment (PubMed:25378179). Promotes light-regulated transcription of CHS, CAB, HYH and HY5. Regulates positively photomorphogenesis (e.g. hypocotyl elongation inhibition and cotyledon opening in response to blue light) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179, ECO:0000269|PubMed:26596765}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00063PBMTransfer from AT4G18390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV39049.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the miRNA miR-JAW (PubMed:12931144). Induced by blue light. Stabilized by light but labile in darkness due to proteasome-dependent proteolysis (at protein level) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:26596765}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096599.11e-171transcription factor TCP2-like
RefseqXP_011096600.11e-171transcription factor TCP2-like
RefseqXP_020554008.11e-171transcription factor TCP2-like
SwissprotQ93V433e-75TCP2_ARATH; Transcription factor TCP2
TrEMBLA0A2Z7BX540.0A0A2Z7BX54_9LAMI; Teosinte branched 1 isoform 1
STRINGMigut.M00891.1.p1e-166(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24642252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.23e-47TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  2. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]