PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV38858.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | HB-other | ||||||||
Protein Properties | Length: 1706aa MW: 192420 Da PI: 5.9857 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.3 | 1.3e-18 | 25 | 80 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t++qle+Le+ ++ ++yps++ r+eL++klgL++rq ++WF+ rR k++k KZV38858.1 25 VKRKMKTPSQLETLEKTYAGESYPSEALRAELSAKLGLSDRQLQMWFCHRRLKDRK 80 58999*************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.4E-17 | 13 | 80 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.65E-15 | 17 | 80 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.503 | 21 | 81 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-17 | 23 | 85 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.29E-13 | 24 | 81 | No hit | No description |
Pfam | PF00046 | 2.2E-16 | 25 | 80 | IPR001356 | Homeobox domain |
PROSITE profile | PS50827 | 16.047 | 558 | 617 | IPR018501 | DDT domain |
SMART | SM00571 | 3.0E-19 | 558 | 617 | IPR018501 | DDT domain |
Pfam | PF02791 | 9.7E-16 | 559 | 614 | IPR018501 | DDT domain |
Pfam | PF05066 | 4.5E-14 | 688 | 756 | IPR007759 | HB1/Asxl, restriction endonuclease HTH domain |
Pfam | PF15612 | 5.9E-6 | 908 | 944 | IPR028942 | WHIM1 domain |
Pfam | PF15613 | 7.9E-9 | 1080 | 1151 | IPR028941 | WHIM2 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1706 aa Download sequence Send to blast |
MEVGSGSGGG VSDEVEKDRP EEPRVKRKMK TPSQLETLEK TYAGESYPSE ALRAELSAKL 60 GLSDRQLQMW FCHRRLKDRK PTAEKRSGKM ASPSAARANS GGCADELKVV NADVTKEEFS 120 SGLSLFGNMD SFQRQQRVIA HKVGTAVPRI SAELPVMRRF YEPPLAVSEQ RAVAFVEAQL 180 GEPLMEDGPI LGMEFDPLPP GAFGAPIVPS GQQKSAGWPC DLCVNERPET KPIKGSSRTL 240 HEYQFLPEKP HARNDAYERT LPPHYYVSPS DIRTARVPLP TGKSNMHNNE QVCPGYGLQG 300 HMPSFSLLPQ QGRQGIHLSP ASADVDIVPR TVPLMDANID THYVHSKSGL DKQSATPDRV 360 IIYDEMMIER KRKTEEARIA KEVQAHDKRI RKEIEKQNIL RKKREEQMWK EMERKDRERR 420 KEEERMLREK QREEERYQRE QRREMERREK FLQKEYIRAE KMRLKEELRR EKEAVRIKAA 480 NNRAAARRIA KESMDLIEDE RLELMELAAS SNGLPSIMAL DGDTLQNLDS LKDKLPGFPP 540 KSVHLKKPFR VQPWADSEES VGNLIMVWRF LITFADVLGL WPFTLDEFTQ AFHDFDLRLL 600 GEIHVALLRC IVKDIEDVAR TPATSLATNQ HSAVNPGGGH RRIVEGVDGG AEIISNLRSG 660 LAAEHAVALM QERGLSNPRR SRHRLTPGTV KFAAFHILSL VGSKGLSILE VADKIQKSGL 720 RDLTTSKTPE ASISAALSRD TKLFERTAPS TYCVRSPYRK DPVDAESILA AAREKIWVYQ 780 NGIAEGEDAE DVEKENTEQD QDSDSEVAED PDADDLDGEL KLKETSYSSE MSNLKSRTLS 840 HHGKIRPSLS RDTSAVSHGN VKGSSVLTHS FGEIKRNGGS LFDFSGPHSY YISDNNTAVI 900 DEYVSIEPWV QGLTEGEYTD LSIEERLSAL VALTGIANEG NAIRLALEER MEAANALKKQ 960 MWAEAQLDKR RVKDEQVKLQ YSSFAVNRAD QISAHCDIED RIGPQGFDMR NEVSCSKRPL 1020 LLVDLNDQQC EQNSCNDALT QDPLFSDTLL LQRSVYATEK SRKELKAFIA HHAEALYVYR 1080 SLPLGLDRRF NRYWQLITST SPNDPCSGRI FVELIDGVWR LIDSEEDFNA LLSSLDVRGT 1140 REFHLHYMLL KVEASFKVTV RTNLSLATSI KHASDGVQKV LQMRPKLDCY SSMHSSSSFV 1200 FTPYSISPEN ELPLPDESRK NREEEYYIIE SDNGFEKWMM DECLNSRLFA QKYGSLRCRQ 1260 LLDICKYCHE LFSCDDTQCP SCHSTCSTSE KPFDFLKQGK KLSEGFGRVL RKLSFPLQIR 1320 LLKAQLATIE ASIPPDAFKS VWSEENRKSW GMKLHLSSSA AELLETLTLL ENSIERKFLS 1380 ASYEATCELL SSSCHIEHSA DSFSRPGAVA VLAWIPQTTA AVALRLMELD SSIYYTSERK 1440 GVCLEDNGSG HFTKFPSRMG SSMDNVSRAG YLQHHNWLDL ISGQTSLKRS RGRPRGPSRT 1500 SGKSQRKTND CRDHCHVTTG RGEKFGEVTG WRGRPSGCRK GRRSVRNGQK PTKRLTQNTG 1560 AKRLPLDKVS ETPCIRKEER DLEETPFEAV GDESSSSSEE SDFDDLNVQA SPDEYRDVLV 1620 DDLPGVGNVD YGVDVEDDQC VDVGNRDNMD DDDDDDNVED FVPLDYYTDG AFSRQYHDEE 1680 NQSTREEQVG DVDRSRNSSS SSDYSF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 413 | 421 | RKDRERRKE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV38858.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011085379.1 | 0.0 | homeobox-DDT domain protein RLT2-like | ||||
TrEMBL | A0A2Z7BZ35 | 0.0 | A0A2Z7BZ35_9LAMI; Uncharacterized protein | ||||
STRING | XP_009773812.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2142 | 23 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44180.1 | 0.0 | Homeodomain-like transcriptional regulator |