PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV38839.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB_related
Protein Properties Length: 320aa    MW: 35098.3 Da    PI: 10.0175
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV38839.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.36.3e-12555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l+ +v ++G+g W+tI +  +       R+  ++k++w++
       KZV38839.1  5 KQKWTPEEEAALKAGVLKHGPGKWRTILKDPQfsgvlCLRSNVDLKDKWRN 55
                     79***********************************66**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.218158IPR017930Myb domain
SuperFamilySSF466893.3E-15269IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.2E-14456IPR009057Homeodomain-like
SMARTSM007171.2E-6459IPR001005SANT/Myb domain
PfamPF002494.7E-9555IPR001005SANT/Myb domain
CDDcd116601.03E-17656No hitNo description
PROSITE profilePS5150421.685115188IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467852.23E-16118198IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005261.8E-10118183IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.107.2E-15123191IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005381.1E-8125181IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0033613Molecular Functionactivating transcription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0070491Molecular Functionrepressing transcription factor binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MGAPKQKWTP EEEAALKAGV LKHGPGKWRT ILKDPQFSGV LCLRSNVDLK DKWRNISVMA  60
NGWGSRERAR LALKRTQPAH KQGESSVALS TISQSDEEML DPGSIAASGG SSPADGPKRA  120
IMRLDNLIIE AINKLKEPGG SNKTTIAAYI EDQYWAPPNF KRILSAKLRH LATTGKLVKM  180
KRKFRIAVSS KLSERRKNPS ISLHEGRQKI SRGIDCDDSI GKSQIDLELA KMRRMTPEEA  240
AAAAAQAVAE AEAAMAEAEI AAQEAEAAEA DAEAAQAFAD AALKMLKEKN TPQMMIMRKQ  300
LNDSCQYGKE YTLMNMSFTF
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00607ChIP-seqTransfer from AT1G49950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV38839.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088080.11e-139telomere repeat-binding factor 1 isoform X1
RefseqXP_020552115.11e-139telomere repeat-binding factor 1 isoform X1
SwissprotQ8VWK44e-93TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLA0A2Z7BWK60.0A0A2Z7BWK6_9LAMI; Telomere repeat-binding factor 1-like
STRINGMigut.B00451.1.p1e-124(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28642448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-90telomere repeat binding factor 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Features of Arabidopsis genes and genome discovered using full-length cDNAs.
    Plant Mol. Biol., 2006. 60(1): p. 69-85
    [PMID:16463100]
  2. Schrumpfová PP, et al.
    Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase.
    Plant J., 2014. 77(5): p. 770-81
    [PMID:24397874]
  3. Liang SC, et al.
    Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.
    PLoS Genet., 2015. 11(12): p. e1005660
    [PMID:26642436]
  4. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]
  5. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]