PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV38777.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family NF-X1
Protein Properties Length: 1535aa    MW: 167882 Da    PI: 7.7906
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV38777.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X118.54.3e-06755773119
    zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                 CG+H C +lCH GpC+pC+
  KZV38777.1 755 CGRHHCDRLCHVGPCDPCQ 773
                 ******************6 PP
2zf-NF-X117.78e-06819836118
    zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                 CG+H C+++CH+G C++C
  KZV38777.1 819 CGNHGCIETCHPGLCGEC 836
                 ****************** PP
3zf-NF-X117.49.5e-06938956119
    zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                 CG+H+C +lCH G CppC 
  KZV38777.1 938 CGQHSCTSLCHSGHCPPCL 956
                 ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048113.5E-2218121IPR006896Sec23/Sec24, trunk domain
SuperFamilySSF533005.23E-1719123IPR002035von Willebrand factor, type A
Gene3DG3DSA:3.40.50.4103.5E-3019123IPR002035von Willebrand factor, type A
SuperFamilySSF819951.22E-35123220No hitNo description
PfamPF080331.4E-19126209IPR012990Sec23/Sec24 beta-sandwich
PfamPF048152.6E-19221317IPR006900Sec23/Sec24, helical domain
SuperFamilySSF818111.39E-23221324IPR006900Sec23/Sec24, helical domain
SuperFamilySSF827541.05E-17325443IPR007123Gelsolin-like domain
Gene3DG3DSA:3.40.20.101.2E-29325437IPR029006ADF-H/Gelsolin-like domain
PfamPF006268.3E-7341412IPR007123Gelsolin-like domain
SuperFamilySSF578501.15E-6577647No hitNo description
PROSITE profilePS500168.671585646IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590588643IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.347588644IPR001841Zinc finger, RING-type
CDDcd060081.95E-7677738No hitNo description
SMARTSM004380.023700718IPR000967Zinc finger, NF-X1-type
PfamPF0142212702717IPR000967Zinc finger, NF-X1-type
CDDcd060089.94E-14745793No hitNo description
SMARTSM004382.4E-4755774IPR000967Zinc finger, NF-X1-type
PfamPF014221.7E-4755772IPR000967Zinc finger, NF-X1-type
CDDcd060082.73E-8809849No hitNo description
SMARTSM004380.0033819838IPR000967Zinc finger, NF-X1-type
PfamPF014220.0058819836IPR000967Zinc finger, NF-X1-type
SMARTSM00438160900934IPR000967Zinc finger, NF-X1-type
PfamPF0142226900911IPR000967Zinc finger, NF-X1-type
CDDcd060085.67E-11928980No hitNo description
SMARTSM004382.1E-4938957IPR000967Zinc finger, NF-X1-type
PfamPF014225.1E-4938955IPR000967Zinc finger, NF-X1-type
CDDcd060085.16E-79851033No hitNo description
SMARTSM004380.0599951013IPR000967Zinc finger, NF-X1-type
PfamPF01422149951012IPR000967Zinc finger, NF-X1-type
CDDcd060082.42E-410381125No hitNo description
SMARTSM004380.02810481078IPR000967Zinc finger, NF-X1-type
PfamPF014220.003610481063IPR000967Zinc finger, NF-X1-type
PfamPF014224510801106IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0610871108IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006886Biological Processintracellular protein transport
GO:0006888Biological ProcessER to Golgi vesicle-mediated transport
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0030127Cellular ComponentCOPII vesicle coat
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1535 aa     Download sequence    Send to blast
MTIPNTNYIA IVLTIYDVTV LPSIGIASLL SREAEGRTNV AAGEKEVHKL LQPMDKIMKT  60
MAIEFAEHQV CVDLFITSQT YVDIASLSVV SRTTGGQVYY YYPFSALSDP AKLYNDLRWN  120
VTRPQGFEAV MRVRCSQGIQ VQEYHGNYCK HVPTDVDLPA IDCDKTIMVT VKHNDKLQEG  180
SECAFQCALL YSTVYGQRRI RVSTLSLPCT NMLSNLFRSA DLGTLFTCML KQVANEIPLA  240
PLAQVRDQVT NVCVNILYSY RKFCATVSSS GQLVLPEALK LLPLYVLALL KSSGLRSDGR  300
IDDRSFWISY VSPLAVPLVI PLVYPRMIVL HDLDEKESDN VVIPTSVPLS SEHISDEGVY  360
LLENGLECLI YVGNSVQPDI LRKLFGISSI QDISSQSLLQ QLDNPLSKKV NAILNEIRHQ  420
RCSYLRLKLC RKGDPSDIST ATADQDFGYL DRIMSVSDQT SRRENNYRRS RNNHFQNSRR  480
EWVLRGSSTT ATTVSPAATV DNSSQTDDGN GNGVGSVNRL VRPVAHNRNS NTSGSRGNTD  540
RFINQPKQKE MDRGIDGGKE KGKVLRDTNV PQLLQEIQEK LLKGSVECMI CYDMVRRSAP  600
IWSCCSCYSI FHLNCIKKWA RAPTSVDLLA EKNQGLNWRC PGCQSVQLVS SKDIRYVCFC  660
GKRPDPPSDL YLTPHSCGEQ CGKLLEKDVP HTGMSKEDLC PHVCVLQCHP GPCPPCKAFA  720
PPRRCPCGKK VITTRCSDRK SVLTCGQTCG KLLDCGRHHC DRLCHVGPCD PCQVLLNASC  780
FCKKNIDIIQ CGDMILKGEV KVEDGSFSCG FTCGKMLTCG NHGCIETCHP GLCGECELLP  840
GRIKTCCCGY MSFWGLSAMS CTVTQSVAVV QLRVLWSATK LFPGVDNYTC DKPCGLKKNC  900
GRHRCSERCC PLSNSNGSPL IDWDPHLCSM PCEKKLRCGQ HSCTSLCHSG HCPPCLETIF  960
TDLSCACGRT SIPPPLPCGT PHPSCQYPCA VPQPCGHPSS HNCHFGDCPP CSVPVAKECV  1020
GGHVVLRNIP CGSKDIRCNK LCGKTRQCGL HACSRTCHPS PCESFTGSTT GLRVSCGQTC  1080
GAPRRDCRHT CTALCHPSAA CPDVRCEFSV TITCSCGRIT ATVPCDAGGS SSGYSVDTVF  1140
EASIIQKLTA PLQPAEGNGE RVPLGQRKLM CDEECAKMER KKVLADAFDA NSSNLTALHF  1200
GENASVSEVL SDLLRRDSKW VFSVEERCKY LVLGRGRGGL SALKVHVFCI MSKEKRDAVR  1260
LIAERWKLSV NAAGWEPKRF VVVHVTPKSR APARILGVKG SSSGNLTHPP IFDSLVDMDP  1320
RLVVALFDLP READISALVL RFGGECELVW LNDKNALAVF GDPARAATAM RRLDQGSVYY  1380
GAIVVPQNGS ATPVTSSANA WGSAAAAKDA GTVPVVKGNN PWKKVVLQEP DWKEESSWGA  1440
EEWSVNIADS KLPSLKGKEA PSVASTNRWS ILDSGSTTNS SNDSVKIEPM SKQPESSSAT  1500
ESRSEVICIN PSTLQEGVSD EQSGDVVDDW EKACE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3eh2_A2e-7950438344732Protein transport protein Sec24C
3eh2_B2e-7950438344732Protein transport protein Sec24C
3eh2_C2e-7950438344732Protein transport protein Sec24C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV38777.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022865056.10.0NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A2Z7C2P10.0A0A2Z7C2P1_9LAMI; Uncharacterized protein
STRINGMigut.D01221.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93132428
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1