PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV38526.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family HD-ZIP
Protein Properties Length: 222aa    MW: 25545 Da    PI: 7.254
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV38526.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.21.6e-1967120356
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 k+ ++++eqle Le+ F+ + +++ +++ +LA++lg++ rq+ vWFqNrRa++k
  KZV38526.1  67 KKKRLSNEQLESLENSFQDEIKLDPDRKMKLARELGMQPRQIAVWFQNRRARWK 120
                 56679************************************************9 PP
2HD-ZIP_I/II118.83e-3867155290
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                  kk+rls+eq+++LE+sF+ e kL+p+rK++lareLg+qprq+avWFqnrRAR+k+kqlE+ y+aLk+++d++++e+++L++ev +Lr+ 
   KZV38526.1  67 KKKRLSNEQLESLENSFQDEIKLDPDRKMKLARELGMQPRQIAVWFQNRRARWKAKQLERLYDALKQEFDNVSREKQKLQQEVLALRAI 155
                  9*****************999*****************************************************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.84E-1956124IPR009057Homeodomain-like
PROSITE profilePS5007117.05462122IPR001356Homeobox domain
SMARTSM003892.4E-1764126IPR001356Homeobox domain
PfamPF000461.0E-1667120IPR001356Homeobox domain
CDDcd000865.35E-1667123No hitNo description
Gene3DG3DSA:1.10.10.605.0E-2168129IPR009057Homeodomain-like
PRINTSPR000311.5E-593102IPR000047Helix-turn-helix motif
PROSITE patternPS00027097120IPR017970Homeobox, conserved site
PRINTSPR000311.5E-5102118IPR000047Helix-turn-helix motif
PfamPF021836.6E-8122155IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010434Biological Processbract formation
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MDWNGNMRVP FVSQQPENSY GYLHNYNYDQ FPGLEMKQPC VQAGLLPTSL LEMKNNSLGA  60
VLQQDSKKKR LSNEQLESLE NSFQDEIKLD PDRKMKLARE LGMQPRQIAV WFQNRRARWK  120
AKQLERLYDA LKQEFDNVSR EKQKLQQEVL ALRAIVLKQQ VAKKQVSTGY TEVSGEETVE  180
STSIPGSLNP GGVNQIAECN SLLNMEDYNQ AVMMPPYWAN MP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114122RRARWKAKQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00486DAPTransfer from AT5G03790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV38526.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101501.11e-102putative homeobox-leucine zipper protein ATHB-51 isoform X1
SwissprotQ9LZR02e-52ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A2Z7BW591e-163A0A2Z7BW59_9LAMI; Homeobox-leucine zipper protein ATHB-51
STRINGMigut.J00491.1.p3e-94(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38692246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.14e-48homeobox 51
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]