PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV38277.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family TCP
Protein Properties Length: 433aa    MW: 47600.5 Da    PI: 6.7987
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV38277.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP112.84.8e-35361543116
         TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.kaaksaakskks 100
                 g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak ai+el ++++ +++ c+++++s+++    +g  + k+ ++++++
  KZV38277.1  36 GRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDELEELPAWNPTTCSQQQESQEK----IGqVRVKFGEEQQHE 130
                 89*************************************************************99999999333333222....232112222222222 PP

         TCP 101 qksaasalnlakesr..........a 116
                  ++a+  l +++ s            
  KZV38277.1 131 LHQAN--LVISNVSGpsskrvmtvlG 154
                 22222..3333322222222333321 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.5E-3236167IPR005333Transcription factor, TCP
PROSITE profilePS5136933.1653795IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MGERSHHHQS SSSSRLRSNG GEIVEVQGGR ILKSIGRKDR HSKVCTAKGP RDRRVRLAAH  60
TAIQFYDVQD RLGYDRPSKA VDWLIKKAKS AIDELEELPA WNPTTCSQQQ ESQEKIGQVR  120
VKFGEEQQHE LHQANLVISN VSGPSSKRVM TVLGSEDEQQ DLHQRGNMNS NQNEQNTNFL  180
PTSLDSGSFA DSITTSFPIA ASAQSSSLSM EFQGFPVPNF LPRDSSQNQD LRLSLQSFQD  240
PVLLHHHNQQ QRHQDPNHNI EQSQVLLSGI PLGYDGTNDW PEHQQHLAEL IRLQRLSAWN  300
TGGDPGSASG GAAVATRSLF NSPPAPQPLL QQLLGQSQNF SQRGPLQSSN TPSFRAWMDP  360
SAISMAAPAE HIPQHHHYPA VVPIYPSSIS GIGFASGLGG FSGFCIPARI RGDVEEHDGC  420
SDKPSSDPPD SHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-194295154Putative transcription factor PCF6
5zkt_B1e-194295154Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV38277.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082737.10.0transcription factor TCP4-like
RefseqXP_011082738.10.0transcription factor TCP4-like
TrEMBLA0A2Z7C1780.0A0A2Z7C178_9LAMI; Uncharacterized protein
STRINGXP_009785152.11e-149(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32072349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.36e-69TCP family protein