PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV38237.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family HD-ZIP
Protein Properties Length: 325aa    MW: 36828.5 Da    PI: 8.4526
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV38237.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox629.2e-2057109456
                 -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 ++++++eq   Le+ F +++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  KZV38237.1  57 KRKLSEEQMSMLERSFGSEHKLESERKDRLAAELGLDPRQVAVWFQNRRARWK 109
                 45899***********************************************9 PP
2HD-ZIP_I/II117.57.3e-3856147293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  +kr+ls+eq+++LE+sF +e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++d+ + e++rLe++  +L+e+l+e
   KZV38237.1  56 RKRKLSEEQMSMLERSFGSEHKLESERKDRLAAELGLDPRQVAVWFQNRRARWKSKKLEEEYSRLKSEHDSTVVEKCRLETQLLKLKEQLRE 147
                  8****************************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.8651111IPR001356Homeobox domain
SMARTSM003894.1E-1854115IPR001356Homeobox domain
CDDcd000861.44E-1656112No hitNo description
PfamPF000464.2E-1757109IPR001356Homeobox domain
SuperFamilySSF466897.7E-1857120IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.0E-2058118IPR009057Homeodomain-like
PRINTSPR000311.8E-58291IPR000047Helix-turn-helix motif
PROSITE patternPS00027086109IPR017970Homeobox, conserved site
PRINTSPR000311.8E-591107IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MNPETDDPMA LISEYYPSEI YSQFEPQQEA AAPNPKPRRR RKKNRGDEGG VDGVMRKRKL  60
SEEQMSMLER SFGSEHKLES ERKDRLAAEL GLDPRQVAVW FQNRRARWKS KKLEEEYSRL  120
KSEHDSTVVE KCRLETQLLK LKEQLREAEK EIRRLSECGD GFSSNSPSSS FSMDVMNKPP  180
FMGEFGMEGL ENVIYNGSDC NNYGLGLGIT DSACKNQLVV VSVQYGPFNT HIPIRSTTIG  240
KSRVAKDPIA MHTSWRSNSD IASVTRQTHL PKTYPVLWPE IYHTIVSSDS IGYPCMRASG  300
ESSTTKHRLL HASGPHPIPP PNDPK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14058RKKNRGDEGGVDGVMRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00473DAPTransfer from AT4G36740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV38237.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099589.22e-88homeobox-leucine zipper protein ATHB-40
SwissprotO232087e-62ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLA0A2Z7C1400.0A0A2Z7C140_9LAMI; Homeobox-leucine zipper protein ATHB-40
STRINGSolyc02g085630.2.14e-76(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.19e-48homeobox protein 40
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]