PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KZV37903.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 198aa MW: 22263.1 Da PI: 11.5738 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.2 | 8.5e-18 | 29 | 78 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr++ +grWvAeI+d + ++ r +lg+f taeeAa+a+++a+ l+g KZV37903.1 29 KFVGVRQRA-SGRWVAEIKDTT---QKIRMWLGTFETAEEAARAYDEAACILRG 78 799***999.7*********32...35**********************99998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.8E-12 | 29 | 78 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-27 | 29 | 87 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.92E-19 | 29 | 87 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.52E-29 | 29 | 85 | No hit | No description |
SMART | SM00380 | 3.4E-34 | 29 | 92 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.979 | 29 | 86 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-7 | 30 | 41 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-7 | 52 | 68 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 198 aa Download sequence Send to blast |
MEIQFEQKEN KNGNKTAKNG RNNNKSRNKF VGVRQRASGR WVAEIKDTTQ KIRMWLGTFE 60 TAEEAARAYD EAACILRGSN TRTNFVTSHL RSSPNSPLAS RIRNLLNTKK LKSNAKNQSH 120 ALLALVLLQL LIVIKTRALP LPRSSVLMMI IVDAIRCPKM CISRISAILI CPGWRSYAGA 180 GTIRRCLMIT FVYQSSRG |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-14 | 18 | 85 | 3 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in the symbiotic nodule signaling pathway in response to rhizobial stimulation. Functions as a transcriptional regulator required for root infection by symbiotic rhizobia, infection thread (IT) formation, and nodule development. May coordinate these processes (PubMed:28503742, PubMed:28028038, PubMed:28068194). Functions downstream of the CCAMK-CYCLOPS complex (PubMed:28503742, PubMed:28028038). Probably not involved in arbuscular mycorrhizal (AM) symbiosis (PubMed:28068194). {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28068194, ECO:0000269|PubMed:28503742}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KZV37903.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced in nodules 7 days after rhizobial inoculation. {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28503742}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009757570.1 | 1e-48 | PREDICTED: ethylene-responsive transcription factor RAP2-11-like | ||||
Refseq | XP_016475325.1 | 1e-48 | PREDICTED: ethylene-responsive transcription factor RAP2-11-like | ||||
Swissprot | A0A1X9PY88 | 1e-48 | ERN1_LOTJA; Ethylene-responsive transcription factor ERN1 | ||||
TrEMBL | A0A2Z7BTN2 | 1e-143 | A0A2Z7BTN2_9LAMI; Uncharacterized protein | ||||
STRING | XP_009757570.1 | 5e-48 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2018 | 22 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G19790.1 | 1e-25 | related to AP2 11 |
Publications ? help Back to Top | |||
---|---|---|---|
|