PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV37355.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family ERF
Protein Properties Length: 169aa    MW: 18945.9 Da    PI: 4.7297
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV37355.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.4e-193079255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                 y+GVr++  +g+WvAeIr+p   + r +r++lg+f t  eAa+a++ a+++l+g
  KZV37355.1 30 TYRGVRQRT-WGKWVAEIREP---N-RgARVWLGTFNTSLEAAQAYDDAAQRLYG 79
                69****999.**********8...3.35************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.33E-172985No hitNo description
PROSITE profilePS5103221.0353087IPR001471AP2/ERF domain
PfamPF008473.3E-143079IPR001471AP2/ERF domain
SuperFamilySSF541715.17E-203087IPR016177DNA-binding domain
SMARTSM003801.2E-313093IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.8E-293086IPR001471AP2/ERF domain
PRINTSPR003673.7E-103142IPR001471AP2/ERF domain
PRINTSPR003673.7E-105369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MEGSVKKTTV GRSRKGCMRG KGGPENALCT YRGVRQRTWG KWVAEIREPN RGARVWLGTF  60
NTSLEAAQAY DDAAQRLYGS CAKLNLTPPA ADRSSGAGGG EAELSTFSPS EMNEDFWVND  120
RHYEDEANCY ELWDTPVAPS LLDDNKQDFS SWPEFPPGNN YLPQWEWTI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-163186662ATERF1
3gcc_A2e-163186662ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. {ECO:0000250, ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00519DAPTransfer from AT5G18450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV37355.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084760.15e-54ethylene-responsive transcription factor RAP2-2-like
SwissprotP618271e-42DRE2G_ARATH; Dehydration-responsive element-binding protein 2G
TrEMBLA0A2Z7BZA41e-123A0A2Z7BZA4_9LAMI; Dehydration-responsive element-binding protein 2E
STRINGMigut.F01818.1.p4e-53(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31552247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.15e-45ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]