PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV37345.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

NAC

Protein Properties

Length: 385aa MW: 43837.9 Da PI: 8.0876

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV37345.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.3	3e-53	11	140	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 +ppGfrFhPtdeel+++yLkkkv+ +k+++ evi+evd++k+ePw+L++++k ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk + + + KZV37345.1 11 VPPGFRFHPTDEELLHFYLKKKVSLQKFDM-EVIREVDLNKIEPWELQERCKIgstPQNEWYFFSHKDRKYPTGSRTNRATSAGFWKATGRDKCIRN-N 107 69**************************.99**********964444222455*********************************9.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrle 129 +++g++ktLvfy+grap+g+ktdW+mheyrle KZV37345.1 108 FNKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 140 999**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.4E-59	6	168	IPR003441	NAC domain
PROSITE profile	PS51005	57.19	11	168	IPR003441	NAC domain
Pfam	PF02365	1.4E-27	12	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009834	Biological Process	plant-type secondary cell wall biogenesis
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048829	Biological Process	root cap development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MSSSSSGRGG VPPGFRFHPT DEELLHFYLK KKVSLQKFDM EVIREVDLNK IEPWELQERC 60 KIGSTPQNEW YFFSHKDRKY PTGSRTNRAT SAGFWKATGR DKCIRNNFNK IGMRKTLVFY 120 RGRAPHGQKT DWIMHEYRLE DNPRNHDPDP QSMSTNEDGW VVCRVFMKKK LLKDGVSTTG 180 NTCTEAPINM STSLTSCNLQ SRSLFSNSDL MMIDMNQYNV QQQQQEEVEL GSEPNYSLAV 240 PVSATSPLSQ YPQIEFPYSI SSDNKQSMMS TNTQYKDHNC ENVIHASAAA NSIGYQVHGI 300 HPSLIERCTQ SSRQAAALSK TDYNINLNEW DPLIITTFNK HDQDHNGVSP RGHIFNGTSD 360 PASSGIVQNN RSTPRSEMHF WAYGK

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MSSSSSGRGG VPPGFRFHPT DEELLHFYLK KKVSLQKFDM EVIREVDLNK IEPWELQERC  60
KIGSTPQNEW YFFSHKDRKY PTGSRTNRAT SAGFWKATGR DKCIRNNFNK IGMRKTLVFY  120
RGRAPHGQKT DWIMHEYRLE DNPRNHDPDP QSMSTNEDGW VVCRVFMKKK LLKDGVSTTG  180
NTCTEAPINM STSLTSCNLQ SRSLFSNSDL MMIDMNQYNV QQQQQEEVEL GSEPNYSLAV  240
PVSATSPLSQ YPQIEFPYSI SSDNKQSMMS TNTQYKDHNC ENVIHASAAA NSIGYQVHGI  300
HPSLIERCTQ SSRQAAALSK TDYNINLNEW DPLIITTFNK HDQDHNGVSP RGHIFNGTSD  360
PASSGIVQNN RSTPRSEMHF WAYGK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-51	11	169	17	166	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-51	11	169	17	166	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-51	11	169	17	166	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-51	11	169	17	166	NO APICAL MERISTEM PROTEIN
3swm_A	5e-51	11	169	20	169	NAC domain-containing protein 19
3swm_B	5e-51	11	169	20	169	NAC domain-containing protein 19
3swm_C	5e-51	11	169	20	169	NAC domain-containing protein 19
3swm_D	5e-51	11	169	20	169	NAC domain-containing protein 19
3swp_A	5e-51	11	169	20	169	NAC domain-containing protein 19
3swp_B	5e-51	11	169	20	169	NAC domain-containing protein 19
3swp_C	5e-51	11	169	20	169	NAC domain-containing protein 19
3swp_D	5e-51	11	169	20	169	NAC domain-containing protein 19
4dul_A	4e-51	11	169	17	166	NAC domain-containing protein 19
4dul_B	4e-51	11	169	17	166	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269\|PubMed:20197506}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00431	DAP	Transfer from AT4G10350	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV37345.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021812962.1	1e-117	protein BEARSKIN2
Swissprot	Q9SV87	1e-105	BRN2_ARATH; Protein BEARSKIN2
TrEMBL	A0A2Z7BZ94	0.0	A0A2Z7BZ94_9LAMI; Uncharacterized protein
STRING	EMJ02042	1e-116	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA134	24	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G10350.1	1e-106	NAC domain containing protein 70

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Kamiya M, et al. Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis. Development, 2016. 143(21): p. 4063-4072 [PMID:27803060]