PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV37343.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family Whirly
Protein Properties Length: 333aa    MW: 36980 Da    PI: 8.9049
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV37343.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly191.51.3e-591522941138
      Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakg.....sneGkvrkal 94 
                 svyk+kaal+ ++ +ptf++l+sg lk++r+G ++l+l +a++erkydW+k+q+falsatev++l++l+sk+sceffhdp++ +     sn+G+vrk+l
  KZV37343.1 152 SVYKGKAALSADPLLPTFSKLESGGLKVDRRGVIMLTLWPAIGERKYDWDKRQKFALSATEVGSLISLGSKDSCEFFHDPSMLSsclilSNAGQVRKSL 250
                 79*******************************************************************************876344446********* PP

      Whirly  95 kvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsll 138
                 +++ ++dGsG+f++l+v n+++k+n+++ vPv+ aefav+r+++
  KZV37343.1 251 SIKAHADGSGYFISLTVANNVLKTNDRLGVPVTTAEFAVMRTAF 294
                 ******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.104.1E-71141313IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544471.41E-63145330IPR009044ssDNA-binding transcriptional regulator
PfamPF085361.8E-55153292IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MGFSPNLRPT TRAQNEIQLK FYSGPEWWTL TIDLPDRTVD SEEGYSNSSL KLCLYGRHVQ  60
AVEATSALLE CNGTFVFICV HPSELIRFGR KWDAFRFGAS QVNPGSRQAL FQDPHSDLKL  120
LNSTTSQRGM STSTASHLPY GRSTDKIFAP YSVYKGKAAL SADPLLPTFS KLESGGLKVD  180
RRGVIMLTLW PAIGERKYDW DKRQKFALSA TEVGSLISLG SKDSCEFFHD PSMLSSCLIL  240
SNAGQVRKSL SIKAHADGSG YFISLTVANN VLKTNDRLGV PVTTAEFAVM RTAFTFALPH  300
IMGWDKYTNQ RPQSANLSSP KALPEFIESE WDR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3n1h_A4e-931413105169StWhy2
3n1i_A4e-931413105169protein StWhy2
3n1j_A4e-931413105169Protein StWhy2
3n1k_A4e-931413105169protein StWhy2
3n1l_A4e-931413105169protein StWhy2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV37343.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095185.11e-121single-stranded DNA-bindig protein WHY2, mitochondrial isoform X2
SwissprotD9J0342e-99WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A2Z7BRX60.0A0A2Z7BRX6_9LAMI; Uncharacterized protein
STRINGMigut.C01402.1.p1e-113(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA97822228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.15e-89WHIRLY 2