PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV37269.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family HSF
Protein Properties Length: 479aa    MW: 53059.5 Da    PI: 4.6917
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV37269.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.56.7e-36101012102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+y++++d+++++++sws ++nsfvv+d++ fa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++i 
    KZV37269.1  10 FLAKTYDMVDDPSTDKIVSWSVSNNSFVVWDSSLFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKSIS 97 
                   9********************999*****************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
    KZV37269.1  98 RRKP 101
                   *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.4E-39494IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.7E-62699IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.63E-34699IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.4E-311099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-201033IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-204860IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404973IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-206173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MPSANVPPPF LAKTYDMVDD PSTDKIVSWS VSNNSFVVWD SSLFARDLLP KYFKHNNFSS  60
FVRQLNTYGF RKVDPDRWEF ANEGFLRGQK HLLKSISRRK PAHSQPHQQQ ATVGQSSSVG  120
ACVEVGKFGL EEEVERLKRD KNVLMQELVR LRQQQQTTDG QLQTMIQRLQ GMEQRQQQMM  180
SFLAKAVNSP GFLAQFMHQQ TDSSRLLTEG NKKRRLKHDN VNSVTNASDG QIIKYQPLIN  240
EAAKALLRQI VKLDSTMLEN VGNDSDSFLM DKSSPPSTTA DSDDSVNHKV SGVALQEAPP  300
FPGLPFTPSG IPIIAFDSAL KAGVQSDLVC PAEVVSKQDS GTSPEIAVQV PPVGDTMLDH  360
SQIMSESNGD LIGTETENSA FMDATILAPS GEVLMDTGGL SPDPQNEWYG EELPGVGDPF  420
WETFLRSPFP SDTEIDPALT DELLEAGETK PKENGWDKSQ RLELLTEQME NLSSNAKKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-2789927129Heat shock factor protein 1
5d5v_B4e-2789927129Heat shock factor protein 1
5d5v_D4e-2789927129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1211216KKRRLK
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV37269.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070307.20.0LOW QUALITY PROTEIN: heat shock factor protein HSF8
SwissprotQ401521e-172HSF8_SOLLC; Heat shock factor protein HSF8
TrEMBLA0A2Z7BS780.0A0A2Z7BS78_9LAMI; Uncharacterized protein
STRINGXP_009619930.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64131931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-101heat shock transcription factor A1D
Publications ? help Back to Top
  1. Zhu B, et al.
    Identification and characterization of a novel heat shock transcription factor gene, GmHsfA1, in soybeans (Glycine max).
    J. Plant Res., 2006. 119(3): p. 247-56
    [PMID:16570125]
  2. Cai SY, et al.
    HsfA1a upregulates melatonin biosynthesis to confer cadmium tolerance in tomato plants.
    J. Pineal Res., 2017.
    [PMID:28095626]
  3. Zhou J, et al.
    Heat Shock Factor HsfA1a Is Essential for R Gene-Mediated Nematode Resistance and Triggers H2O2 Production1.
    Plant Physiol., 2018. 176(3): p. 2456-2471
    [PMID:29339397]