PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV37255.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | MYB | ||||||||
Protein Properties | Length: 138aa MW: 15877.3 Da PI: 10.6169 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61.5 | 1.8e-19 | 19 | 66 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l++++ ++G++ Wk++a++ g++R++k+c++rw++yl KZV37255.1 19 KGAWTAEEDRKLAHYIGKHGPRKWKSVANKSGLNRCGKSCRLRWLNYL 66 79*********************************************7 PP | |||||||
2 | Myb_DNA-binding | 50.8 | 3.9e-16 | 75 | 117 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 + Ed+l+++++++lG++ W++Iar+++ gRt++++k++w+++l KZV37255.1 75 ISDAEDDLILRLHRLLGNR-WSLIARRLP-GRTDNEIKNYWNSHL 117 5788***************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.061 | 14 | 70 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.07E-29 | 16 | 113 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-15 | 18 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.1E-18 | 19 | 66 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-24 | 20 | 73 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.02E-11 | 21 | 66 | No hit | No description |
PROSITE profile | PS51294 | 20.594 | 71 | 121 | IPR017930 | Myb domain |
SMART | SM00717 | 2.9E-15 | 71 | 119 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.0E-25 | 74 | 120 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.0E-14 | 76 | 117 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.86E-11 | 76 | 117 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045165 | Biological Process | cell fate commitment | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048765 | Biological Process | root hair cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MASRDVLDCG DERSISRNKG AWTAEEDRKL AHYIGKHGPR KWKSVANKSG LNRCGKSCRL 60 RWLNYLKPDI KRGGISDAED DLILRLHRLL GNRWSLIARR LPGRTDNEIK NYWNSHLSKK 120 AKLMEKLPAL SITQPCLE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 7e-31 | 18 | 121 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Involved in epidermal cell fate specification in roots and hypocotyl. Together with GL3 or BHLH2, promotes the formation of non-hair developing cells (atrichoblasts) et the N position in root epidermis. Regulates stomata spatial distribution in hypocotyls. Binds to the WER-binding sites (WBS) promoter regions and activates the transcription of target genes such as GL2 and of CPC. {ECO:0000269|PubMed:10589676, ECO:0000269|PubMed:11585796, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15795220, ECO:0000269|PubMed:16207757}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV37255.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Transcriptional activation correlates with reduced histone acetylation on H3 and H4 mediated by HDA18 in N cells. Repressed by CPC in hair cells (H position). {ECO:0000269|PubMed:11910008, ECO:0000269|PubMed:16176989}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012827317.1 | 5e-64 | PREDICTED: transcription factor MYB114-like | ||||
Swissprot | Q9SEI0 | 8e-50 | WER_ARATH; Transcription factor WER | ||||
TrEMBL | A0A2Z7BYZ8 | 4e-95 | A0A2Z7BYZ8_9LAMI; Uncharacterized protein | ||||
STRING | Migut.A01129.1.p | 2e-63 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14750.1 | 3e-52 | myb domain protein 66 |