PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV37214.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 269aa    MW: 29810.4 Da    PI: 7.7462
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV37214.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.21.2e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd  l+++ +++G+g +W + +++ g+ R++k+c++rw++yl
       KZV37214.1 14 RGSWSPEEDATLKEYLHKHGTGgSWIALPQKAGLERCGKSCRLRWLNYL 62
                     89*********************************************97 PP
2Myb_DNA-binding315.9e-1069109246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g++T+eE++ + ++ + lG+++ +   ++++ gRt++++k++w++
       KZV37214.1  69 GAFTQEEEKTIFNLYNILGSRHAS---SHLP-GRTDNDVKNYWNT 109
                      89*******************444...6***.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.682966IPR017930Myb domain
SuperFamilySSF466896.74E-2212107IPR009057Homeodomain-like
SMARTSM007179.8E-111364IPR001005SANT/Myb domain
PfamPF002493.3E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-231569IPR009057Homeodomain-like
CDDcd001674.49E-81662No hitNo description
SMARTSM007178.4E-667113IPR001005SANT/Myb domain
PROSITE profilePS5129411.28767115IPR017930Myb domain
PfamPF002493.2E-869109IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-1670115IPR009057Homeodomain-like
CDDcd001672.13E-670111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MGRSPCCDKT KVKRGSWSPE EDATLKEYLH KHGTGGSWIA LPQKAGLERC GKSCRLRWLN  60
YLRPDIKHGA FTQEEEKTIF NLYNILGSRH ASSHLPGRTD NDVKNYWNTK LKKKVLAERS  120
SSPTTCTAAT SVAAATSTSA TSIAIAGKTA TFQASMNTLA PVPTYSTSFP PNTTTRPSTI  180
SNDPDNSPIP RFVCKDSNEH LNHNITSTYS QSPQDSCTLM QSTLEMDEYY GIKGIPVDEY  240
SYEVLSCLWS SMEAIEVESN AEFARLFPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-22141157108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV37214.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082230.18e-95transcription factor MYB6
TrEMBLA0A2Z7BS500.0A0A2Z7BS50_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.16e-61MYB family protein