PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV37201.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | GATA | ||||||||
Protein Properties | Length: 342aa MW: 37840 Da PI: 6.7441 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55.2 | 9.5e-18 | 231 | 265 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C t kTp+WR gp g+ktLCnaCG++y++ +l KZV37201.1 231 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 265 99*****************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 3.3E-76 | 14 | 320 | IPR016679 | Transcription factor, GATA, plant |
SMART | SM00401 | 8.3E-17 | 225 | 275 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.334 | 225 | 261 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.0E-14 | 227 | 263 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 1.09E-15 | 227 | 289 | No hit | No description |
CDD | cd00202 | 3.31E-14 | 230 | 277 | No hit | No description |
Pfam | PF00320 | 1.2E-15 | 231 | 265 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 231 | 256 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
METPEVFQTG YYNTHFTPER HPSDAKNSEQ FVIEDLLDIP NDEYMVAADG GGEVGVTGIS 60 TDSSALTVVD NSCNSSFSGG SCVEPLFQSA DVGGGRGFPN GHFSSELCVP YDDLAELEWL 120 SNFTEESFSS EDLQKLHLIQ GLQYRFQPDT SRTCPILRPE TSVPAKARSK RSRATPGNWA 180 SRILAVAPIP SSNAPPVSSS SSSNISTVSK TEGTEKKATE NSPTGSDGRK CLHCATDKTP 240 QWRTGPMGPK TLCNACGVRY KSGRLVPEYR PASSPTFVLT KHSNSHRKVL ELRRQKEQMR 300 TQQNPQQHFL HHHRHQNMMF DISNGDDYLI HQHIGPDFRQ LI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00048 | PBM | Transfer from AT4G32890 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV37201.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011081778.1 | 1e-161 | GATA transcription factor 12-like | ||||
Swissprot | O82632 | 3e-85 | GATA9_ARATH; GATA transcription factor 9 | ||||
TrEMBL | A0A2Z7BRK2 | 0.0 | A0A2Z7BRK2_9LAMI; GATA transcription factor | ||||
STRING | XP_009631501.1 | 1e-142 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1919 | 23 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32890.1 | 1e-83 | GATA transcription factor 9 |
Publications ? help Back to Top | |||
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