PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV37201.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family GATA
Protein Properties Length: 342aa    MW: 37840 Da    PI: 6.7441
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV37201.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.29.5e-18231265135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  KZV37201.1 231 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 265
                 99*****************************9885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.3E-7614320IPR016679Transcription factor, GATA, plant
SMARTSM004018.3E-17225275IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.334225261IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.0E-14227263IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.09E-15227289No hitNo description
CDDcd002023.31E-14230277No hitNo description
PfamPF003201.2E-15231265IPR000679Zinc finger, GATA-type
PROSITE patternPS003440231256IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
METPEVFQTG YYNTHFTPER HPSDAKNSEQ FVIEDLLDIP NDEYMVAADG GGEVGVTGIS  60
TDSSALTVVD NSCNSSFSGG SCVEPLFQSA DVGGGRGFPN GHFSSELCVP YDDLAELEWL  120
SNFTEESFSS EDLQKLHLIQ GLQYRFQPDT SRTCPILRPE TSVPAKARSK RSRATPGNWA  180
SRILAVAPIP SSNAPPVSSS SSSNISTVSK TEGTEKKATE NSPTGSDGRK CLHCATDKTP  240
QWRTGPMGPK TLCNACGVRY KSGRLVPEYR PASSPTFVLT KHSNSHRKVL ELRRQKEQMR  300
TQQNPQQHFL HHHRHQNMMF DISNGDDYLI HQHIGPDFRQ LI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00048PBMTransfer from AT4G32890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV37201.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011081778.11e-161GATA transcription factor 12-like
SwissprotO826323e-85GATA9_ARATH; GATA transcription factor 9
TrEMBLA0A2Z7BRK20.0A0A2Z7BRK2_9LAMI; GATA transcription factor
STRINGXP_009631501.11e-142(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19192363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.11e-83GATA transcription factor 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]