PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV37138.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family NAC
Protein Properties Length: 330aa    MW: 36791 Da    PI: 7.6017
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV37138.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.81.1e-53101391128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kg 97 
                 lppGfrFhPtdeelvv+yLkkk+++++l+++++i+evd+yk++Pw+Lp+k++ +++ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+v+++  + 
  KZV37138.1  10 LPPGFRFHPTDEELVVQYLKKKAASEPLPANTIIAEVDLYKYDPWELPSKASFGDQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVFAAtdQA 108
                 79****************************999***************988999***************************************997778 PP

         NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                 ++vg+kk Lvfy g+ pkg ktdW+mheyrl
  KZV37138.1 109 QKVGVKKALVFYCGKPPKGIKTDWIMHEYRL 139
                 88***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.11E-624174IPR003441NAC domain
PROSITE profilePS5100560.66510174IPR003441NAC domain
PfamPF023651.3E-2711139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MESSCGQPHL PPGFRFHPTD EELVVQYLKK KAASEPLPAN TIIAEVDLYK YDPWELPSKA  60
SFGDQEWYFF SPRDRKYPNG ARPNRAATSG YWKATGTDKP VFAATDQAQK VGVKKALVFY  120
CGKPPKGIKT DWIMHEYRLL ENNFNVKAPG ILPVISSKGS SRLDDWVLCR IFKKNTSSST  180
RAVDENERGD RTNMEDVFVS LPSQTMDVYH NPNPGIVKPG SNHNFIQDDR GKLNICYDMS  240
SGTHSNPHMI YALSSTAMPD SMISSPYGMG LESNSGIFSR KDQTRHGPNQ DNIIDNNQSG  300
NDGSNSSSVS LLNQQSNQNS FLKGWDYASS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-72717814169NO APICAL MERISTEM PROTEIN
1ut4_B1e-72717814169NO APICAL MERISTEM PROTEIN
1ut7_A1e-72717814169NO APICAL MERISTEM PROTEIN
1ut7_B1e-72717814169NO APICAL MERISTEM PROTEIN
4dul_A1e-72717814169NAC domain-containing protein 19
4dul_B1e-72717814169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00058PBMTransfer from AT1G61110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV37138.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096265.16e-97NAC transcription factor 25
SwissprotQ8GY429e-91NAC25_ARATH; NAC transcription factor 25
TrEMBLA0A2Z7BU030.0A0A2Z7BU03_9LAMI; Transcription factor
STRINGPOPTR_0011s04650.11e-96(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18142466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.12e-92NAC domain containing protein 25