PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV37129.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family B3
Protein Properties Length: 834aa    MW: 92317.5 Da    PI: 7.2952
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV37129.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.78.8e-18297396198
                 EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                 f+k lt sd+++ grlvlpkk+ae++   ++++e+  l ++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e++l ++
  KZV37129.1 297 FEKLLTASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLEVRDVKGKEWVFQFRFwpNNNSRMYVLE-GITPCLQSLQLQAGDTVTFSRIE-PEGKLIMG 393
                 89**************************555566678***************9989999999***9.********************887.55555555 PP

                 EE- CS
          B3  96 vfr 98 
                  ++
  KZV37129.1 394 CRK 396
                 554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-28293399IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-19294391IPR015300DNA-binding pseudobarrel domain
CDDcd100173.18E-22295396No hitNo description
PROSITE profilePS5086310.814297398IPR003340B3 DNA binding domain
SMARTSM010191.8E-21297397IPR003340B3 DNA binding domain
PfamPF023624.1E-15297396IPR003340B3 DNA binding domain
PROSITE profilePS5105012.804567617IPR011124Zinc finger, CW-type
PfamPF074965.9E-10572614IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 834 aa     Download sequence    Send to blast
MSTSSSTGFC FNFNCRDGSE KWRRGWPRRT GDYAHLCDRC ASAYEEGKFC ETFHLDASGW  60
RSCESCGKTP NPAWPPPSRL LPLQPERMKD LSLKALNATV ASDPEPWDLA LNLFSGFTMP  120
SNVQPRLPFE IGLLGGIDKL RICQRLSTAS REKKDNPIEG LVNRKPGIST IDSSVNGASY  180
KEQSHLSIND FGPITFPKND SAVVGSCMAA ISSKSEANDT RLSAIFSQPC TPSVQVGKQI  240
WNHNRVGSSS EVQPHDGKSR GDDHGQGQLL PRYRPQITDE ELQQISTDSN SVITPLFEKL  300
LTASDAGRIG RLVLPKKCAE AYFPPISQPE GLPLEVRDVK GKEWVFQFRF WPNNNSRMYV  360
LEGITPCLQS LQLQAGDTVT FSRIEPEGKL IMGCRKASSI PSFDQVRPPS PPFLNLGDEI  420
SLFGNNASVL VDDSIKIRSG EGSLVSGNLN DKSRQRFPLI NQDAKADPKS AGLTVKSTFN  480
AKKMLETKPM AHNNRKNSTS GTKSKRLRIE KEDIVELKLT WEEAQLLMRP PPKIAPSVFV  540
IERFEIEEFE EAAPIIGRPT IPVVDHLGLK SQWAQCDECF KWRKVPEDAL LSSRWTCSEN  600
VWDLGRSLCS ATEELSADQL DELLPTISKV SSEKNKATED NSDLFVGLEG LDALANLAIQ  660
GEGESLPHSS PTRTKHPRHK PGCSCIVCIQ PPSGKGLKHK QSCECAVCSS LRRRFRTLME  720
RREKKQMEKE TEALQHQQSP KQLLHINAHP SNKTENSDVN VEDLVTGGCV NEHIGKKRTV  780
VPLKGQIDLN VHPEREEELS PGSNSVAMKC FSMGTTQEDT GGQHLPTDTA VLGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A8e-632753992126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV37129.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096215.10.0B3 domain-containing protein Os07g0563300
TrEMBLA0A2Z7BRR00.0A0A2Z7BRR0_9LAMI; Uncharacterized protein
STRINGMigut.M01204.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA71282126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-142HSI2-like 1