PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV36778.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

NAC

Protein Properties

Length: 421aa MW: 46882.7 Da PI: 7.2843

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV36778.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	116.6	2.4e-36	47	189	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk........sgyW 83 lp+G++F+Ptd+el+ e+L++kvegk+ ++++ +i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+++ + +W KZV36778.1 47 LPAGVKFDPTDQELI-EHLEAKVEGKEskshplIDEFIpTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKIQtecdlqggETRW 143 799**********.99*****6665443333333666646******.555666799***************73334555544778 PP NAM 84 katgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l KZV36778.1 144 HKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 189 *********.999*******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-38	43	208	IPR003441	NAC domain
PROSITE profile	PS51005	32.848	47	208	IPR003441	NAC domain
Pfam	PF02365	1.5E-16	48	189	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence Send to blast
MNKGTQLGSV SSSDLIDAKL EEHQLCGSKH CPGCGHKLEG KPDWVGLPAG VKFDPTDQEL 60 IEHLEAKVEG KESKSHPLID EFIPTIEGED GICYTHPEKL PGVTRDGLSR HFFHRPSKAY 120 TTGTRKRRKI QTECDLQGGE TRWHKTGKTR PVMVNGKQKG CKKILVLYTN FGKNRKPEKT 180 NWVMHQYHLG QHEEEKEGEL VVSKIFYQTQ PRQCNWSSEK SSTLLGEGSS VDPNSQKESG 240 SGSSCNKEMI PQRDEFSAAV VNVGAPIPGY SAIDHIQQLK ADHFSFLPYR KPFDDQAGNV 300 GEASVRREAP RGTCEARDMI HMSHEHHQIS TASAATAYHI SRPSHSISAI ISPPPVMHHT 360 SNIILDQDHS FHVPTIMLPN ENFQQQQQQH HKLGGRSASG LEELIMGCTS TDIKEVCVIN 420 L

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence Send to blast

MNKGTQLGSV SSSDLIDAKL EEHQLCGSKH CPGCGHKLEG KPDWVGLPAG VKFDPTDQEL  60
IEHLEAKVEG KESKSHPLID EFIPTIEGED GICYTHPEKL PGVTRDGLSR HFFHRPSKAY  120
TTGTRKRRKI QTECDLQGGE TRWHKTGKTR PVMVNGKQKG CKKILVLYTN FGKNRKPEKT  180
NWVMHQYHLG QHEEEKEGEL VVSKIFYQTQ PRQCNWSSEK SSTLLGEGSS VDPNSQKESG  240
SGSSCNKEMI PQRDEFSAAV VNVGAPIPGY SAIDHIQQLK ADHFSFLPYR KPFDDQAGNV  300
GEASVRREAP RGTCEARDMI HMSHEHHQIS TASAATAYHI SRPSHSISAI ISPPPVMHHT  360
SNIILDQDHS FHVPTIMLPN ENFQQQQQQH HKLGGRSASG LEELIMGCTS TDIKEVCVIN  420
L

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00460	DAP	Transfer from AT4G29230	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV36778.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020549346.1	0.0	uncharacterized protein LOC105162027 isoform X2
Swissprot	Q9M0F8	1e-174	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A2Z7BSZ3	0.0	A0A2Z7BSZ3_9LAMI; NAC domain-containing protein 8
STRING	VIT_11s0016g02880.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4057	24	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-163	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]