PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV36483.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 311aa    MW: 35277.8 Da    PI: 8.3574
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV36483.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.92.6e-143279148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd +lvd ++q G g W+  ++  g+ R++k+c++rw +yl
       KZV36483.1 32 KGAWTSEEDRILVDFITQNGYGAWRNLPKIAGLLRCGKSCRLRWINYL 79
                     79******************************99************97 PP
2Myb_DNA-binding48.91.6e-1585130148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++t E++ + d++  lG++ W++Ia++++ gRt++++k++w+++l
       KZV36483.1  85 RGPFSTVEEKMIMDLHGTLGNK-WAAIASHLP-GRTDNDIKNFWNSHL 130
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.0E-202482IPR009057Homeodomain-like
PROSITE profilePS5129421.4512783IPR017930Myb domain
SuperFamilySSF466891.98E-2729126IPR009057Homeodomain-like
SMARTSM007171.1E-83181IPR001005SANT/Myb domain
PfamPF002494.0E-113279IPR001005SANT/Myb domain
CDDcd001672.57E-73479No hitNo description
Gene3DG3DSA:1.10.10.603.1E-2483133IPR009057Homeodomain-like
SMARTSM007171.5E-1384132IPR001005SANT/Myb domain
PROSITE profilePS5129416.2584134IPR017930Myb domain
PfamPF002494.8E-1485130IPR001005SANT/Myb domain
CDDcd001676.73E-987130No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MVKKRDKRKE DESRKKKKNG RMACCEKEGI RKGAWTSEED RILVDFITQN GYGAWRNLPK  60
IAGLLRCGKS CRLRWINYLR PNIRRGPFST VEEKMIMDLH GTLGNKWAAI ASHLPGRTDN  120
DIKNFWNSHL RKRFTSIDSN QPAPSMSVDT NLESPLSYQM VQSESIQLEV KSYPSNDEQL  180
TLSETKSEVD FFLRLWNSGV GESFRKIKEC SSEWISHTSS HSPASQTSSL TKVESSSIAT  240
NQLSKSMASQ NVEPWSYRKE ADVFAACSDL PKSYEFDESA DVMLQLLLEF PAGGVDMGFF  300
QESFNNVSAS I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-23321367110B-MYB
1h8a_C2e-233013425128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217KKRDKRKEDESRKKKK
2415RDKRKEDESRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV36483.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076175.11e-119transcription factor MYB3-like
TrEMBLA0A2Z7BPG70.0A0A2Z7BPG7_9LAMI; Uncharacterized protein
STRINGXP_010273102.13e-89(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.13e-79myb domain protein 17