PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KZV36483.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 311aa MW: 35277.8 Da PI: 8.3574 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.9 | 2.6e-14 | 32 | 79 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd +lvd ++q G g W+ ++ g+ R++k+c++rw +yl KZV36483.1 32 KGAWTSEEDRILVDFITQNGYGAWRNLPKIAGLLRCGKSCRLRWINYL 79 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 48.9 | 1.6e-15 | 85 | 130 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++t E++ + d++ lG++ W++Ia++++ gRt++++k++w+++l KZV36483.1 85 RGPFSTVEEKMIMDLHGTLGNK-WAAIASHLP-GRTDNDIKNFWNSHL 130 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.0E-20 | 24 | 82 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.451 | 27 | 83 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.98E-27 | 29 | 126 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-8 | 31 | 81 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-11 | 32 | 79 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.57E-7 | 34 | 79 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-24 | 83 | 133 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-13 | 84 | 132 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 16.25 | 84 | 134 | IPR017930 | Myb domain |
Pfam | PF00249 | 4.8E-14 | 85 | 130 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.73E-9 | 87 | 130 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 311 aa Download sequence Send to blast |
MVKKRDKRKE DESRKKKKNG RMACCEKEGI RKGAWTSEED RILVDFITQN GYGAWRNLPK 60 IAGLLRCGKS CRLRWINYLR PNIRRGPFST VEEKMIMDLH GTLGNKWAAI ASHLPGRTDN 120 DIKNFWNSHL RKRFTSIDSN QPAPSMSVDT NLESPLSYQM VQSESIQLEV KSYPSNDEQL 180 TLSETKSEVD FFLRLWNSGV GESFRKIKEC SSEWISHTSS HSPASQTSSL TKVESSSIAT 240 NQLSKSMASQ NVEPWSYRKE ADVFAACSDL PKSYEFDESA DVMLQLLLEF PAGGVDMGFF 300 QESFNNVSAS I |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-23 | 32 | 136 | 7 | 110 | B-MYB |
1h8a_C | 2e-23 | 30 | 134 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 2 | 17 | KKRDKRKEDESRKKKK |
2 | 4 | 15 | RDKRKEDESRKK |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KZV36483.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011076175.1 | 1e-119 | transcription factor MYB3-like | ||||
TrEMBL | A0A2Z7BPG7 | 0.0 | A0A2Z7BPG7_9LAMI; Uncharacterized protein | ||||
STRING | XP_010273102.1 | 3e-89 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G61250.1 | 3e-79 | myb domain protein 17 |