PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV36410.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family HD-ZIP
Protein Properties Length: 278aa    MW: 31593.6 Da    PI: 9.034
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV36410.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.41.1e-17157211256
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 rk+ +++keq   Le+ F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  KZV36410.1 157 RKKLRLSKEQSAFLEDSFKEHNTLNPKQKLALAKELNLRPRQVEVWFQNRRARTK 211
                 788899***********************************************98 PP
2HD-ZIP_I/II129.61.3e-41157247192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  +kk+rlskeq+++LE+sF+e+++L+p++K +la+eL+l+prqv+vWFqnrRARtk+kq+E+dye+Lkr++++l+een+rL+kev+eLr +lk
   KZV36410.1 157 RKKLRLSKEQSAFLEDSFKEHNTLNPKQKLALAKELNLRPRQVEVWFQNRRARTKLKQTEVDYEYLKRCCETLTEENRRLQKEVQELR-ALK 247
                  69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-17143207IPR009057Homeodomain-like
SuperFamilySSF466891.75E-18146214IPR009057Homeodomain-like
PROSITE profilePS5007116.73153213IPR001356Homeobox domain
SMARTSM003893.1E-15155217IPR001356Homeobox domain
PfamPF000463.9E-15157211IPR001356Homeobox domain
CDDcd000863.15E-15157214No hitNo description
PROSITE patternPS000270188211IPR017970Homeobox, conserved site
PfamPF021839.2E-12213247IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.0E-24213256IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MELALSLGDT PKPFSLHGKS QKILGMDLGF CMENNGGRGE EAGSSESERR ASSSDPTVQL  60
RLLPFSPVHR SRPPSSYTSP FPWPTHDSLV SEGGRGEKCE EWAATLSSSK TDKKSYHMDY  120
FSILKSKRRD FEEITAADRG CANSRGTSDD EENGVARKKL RLSKEQSAFL EDSFKEHNTL  180
NPKQKLALAK ELNLRPRQVE VWFQNRRART KLKQTEVDYE YLKRCCETLT EENRRLQKEV  240
QELRALKATQ PFYKNLPATT LTMCPSCERI ATSNKPTH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205213RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV36410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075258.11e-120homeobox-leucine zipper protein HOX11
SwissprotP466656e-79HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A2Z7BW260.0A0A2Z7BW26_9LAMI; Uncharacterized protein
STRINGcassava4.1_010584m1e-105(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.12e-78homeobox from Arabidopsis thaliana