PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV35910.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family GATA
Protein Properties Length: 298aa    MW: 32845.8 Da    PI: 8.472
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV35910.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.77.9e-19215249135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C +Cg+tkTp+WR gp g+ktLCnaCG+++++ +l
  KZV35910.1 215 CNHCGVTKTPQWRAGPMGSKTLCNACGVRFKSGRL 249
                 *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169924.2E-825296IPR016679Transcription factor, GATA, plant
SMARTSM004018.7E-17209263IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.886209245IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-15211272No hitNo description
Gene3DG3DSA:3.30.50.107.9E-15213247IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.90E-15214263No hitNo description
PfamPF003201.5E-16215249IPR000679Zinc finger, GATA-type
PROSITE patternPS003440215240IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MEYYLQEALK SGVGVESAAG TDDFFVDQLL DFSNGFTEAE GQSEQPEEKE QNKKINARCV  60
SQKKHESPAV SSDDDYGPLN VPAEGLESLE WLSHFIEDSF SDYSLAEKLP HYTAASLSKP  120
AVAAQEQRCF TAPVQTKART KRGRTGMRVW PVLSPSLTES STSSSSSTYS TTSIPTRNRW  180
EVQGLGDSLV KKHKRKPAKI IVNGGAAVAA QPRRCNHCGV TKTPQWRAGP MGSKTLCNAC  240
GVRFKSGRLL PEYRPACSPT FSPELHSNNH RKVLEMRRKK DAETEMEGGN LDSPVRSF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189196VKKHKRKP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV35910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100952.11e-110GATA transcription factor 5-like
SwissprotQ9FH575e-63GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A2Z7BUI70.0A0A2Z7BUI7_9LAMI; GATA transcription factor
STRINGMigut.L00033.1.p7e-99(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11542481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.25e-64GATA transcription factor 5