PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV35598.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

C2H2

Protein Properties

Length: 479aa MW: 54179.3 Da PI: 4.6482

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV35598.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12	0.00066	173	191	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 +CgksF++ ++L++H + + KZV35598.1 173 HCGKSFKSVDDLEVHKSHC 191 7**************9765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50145	12.713	214	261	IPR001293	Zinc finger, TRAF-type
Pfam	PF02176	4.7E-11	215	273	IPR001293	Zinc finger, TRAF-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009941	Cellular Component	chloroplast envelope
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence Send to blast
MNPPVDDNEL EPVKLEEEKE GGPSVHCDLY DTDIVYKIAQ ELLPGLASAC IDNTTGGLLK 60 SPASVAVDIR REMVDYLIQR SENFLAESAI ESGVNEEISE NPYDILSDLI DDFSSSKRNF 120 FSRVSGWLLS EKREDWIDDL VQEMEINGFW LLNRRESVAQ TLLKNVDFKN KYHCGKSFKS 180 VDDLEVHKSH CSFRTMTCTN EGCNSRFSAA QMDHHDSSCP FKILPCEQNC TDRIMRRQMD 240 RHCITICPMK LVKCPFYAIG CHSTIPQCTI DQHRSEGLHS HVLYILQALH GEGLAEILKE 300 RAEDVVKLSS PEQLASARDA RALTFVVKDR DTKLGPLKVE VNSNRSEYLT DSTDKPIKND 360 GLEEFTEREE KQIMSPSKCS DPDDSSHKKE TSGNSPAKVS AQIESKPSQE NLNESPREGK 420 WDIHSPTEVE EQTRTSSIAA VVDPDTEEHT TLPIKKEDLS ESIHDREKHE SANQNEEFD

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence Send to blast

MNPPVDDNEL EPVKLEEEKE GGPSVHCDLY DTDIVYKIAQ ELLPGLASAC IDNTTGGLLK  60
SPASVAVDIR REMVDYLIQR SENFLAESAI ESGVNEEISE NPYDILSDLI DDFSSSKRNF  120
FSRVSGWLLS EKREDWIDDL VQEMEINGFW LLNRRESVAQ TLLKNVDFKN KYHCGKSFKS  180
VDDLEVHKSH CSFRTMTCTN EGCNSRFSAA QMDHHDSSCP FKILPCEQNC TDRIMRRQMD  240
RHCITICPMK LVKCPFYAIG CHSTIPQCTI DQHRSEGLHS HVLYILQALH GEGLAEILKE  300
RAEDVVKLSS PEQLASARDA RALTFVVKDR DTKLGPLKVE VNSNRSEYLT DSTDKPIKND  360
GLEEFTEREE KQIMSPSKCS DPDDSSHKKE TSGNSPAKVS AQIESKPSQE NLNESPREGK  420
WDIHSPTEVE EQTRTSSIAA VVDPDTEEHT TLPIKKEDLS ESIHDREKHE SANQNEEFD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV35598.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011078789.2	0.0	uncharacterized protein LOC105162468 isoform X1
Refseq	XP_011078790.1	0.0	uncharacterized protein LOC105162468 isoform X2
TrEMBL	A0A2Z7BPR3	0.0	A0A2Z7BPR3_9LAMI; Uncharacterized protein
STRING	Migut.C01187.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4442	3	3