PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV35488.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family BBR-BPC
Protein Properties Length: 309aa    MW: 34407 Da    PI: 9.7185
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV35488.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind300.85.3e-9213091301
   GAGA_bind   1 mdddgsre.rnkgyyepa.aslkenlglqlmssiaerdaki..........rernlalsekkaavaerd.....maflqrdkalaernkalverdnkll 82 
                 md +g+ + rn+g+ +++ +slk +lglqlmss+ e+ +             +  +  s++ ++++++      + +   d ++++        ++k+l
  KZV35488.1   1 MDGNGEANlRNWGFLQQQsNSLKGHLGLQLMSSVVEKPSYGggvhdnpynpLQFSVMPSTNGGPFHHHRvggvpETHSPMDYWMNH-------NRDKYL 92 
                 99999999*****999988****************99887778877777664444546677777777778999977778888**99.......667888 PP

   GAGA_bind  83 alllvenslasalpvgvqvlsgtk..sidslqqlsepql..edsavelreeeklealpieeaaeeakekkkkkkrqrakkpk.ekkakkkkkksekskk 176
                 ++l+ ++       ++++vl++++  +++s+q  ++ ++  +++ +++ ee++ e ++  +   +      +kkr+ +k+p  ++k+kk++ + +   k
  KZV35488.1  93 NVLPGNHHNG-YYQSSYGVLPESSlaMTHSIQLPQQMNIskHEDLIPQMEESCEEMNNGIDIGGD-----VVKKRRGGKSPTsTPKEKKPRTRAPRAPK 185
                 8888766543.333455666655411334444333322200223333333333333332222222.....22222333333202334444444444445 PP

   GAGA_bind 177 kvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaae 275
                 +++++ + +r++a+kk  ++v+ng+++D+s +P+P+CsCtG ++qCY+WG+GGWqSaCCt+ +S++PLP+stkrrgaRiagrKmS gafkk+LekLa+e
  KZV35488.1 186 DESTPMV-HRARAPKKRAEVVINGINMDISDIPIPICSCTGNPQQCYRWGSGGWQSACCTMGLSMHPLPMSTKRRGARIAGRKMSIGAFKKVLEKLASE 283
                 5555554.69***************************************************************************************** PP

   GAGA_bind 276 GydlsnpvDLkdhWAkHGtnkfvtir 301
                 Gyd+s p+DL+++WA+HGtnkfvtir
  KZV35488.1 284 GYDFSDPIDLRSYWARHGTNKFVTIR 309
                 *************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062179.1E-961309IPR010409GAGA-binding transcriptional activator
SMARTSM012262.7E-1181309IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MDGNGEANLR NWGFLQQQSN SLKGHLGLQL MSSVVEKPSY GGGVHDNPYN PLQFSVMPST  60
NGGPFHHHRV GGVPETHSPM DYWMNHNRDK YLNVLPGNHH NGYYQSSYGV LPESSLAMTH  120
SIQLPQQMNI SKHEDLIPQM EESCEEMNNG IDIGGDVVKK RRGGKSPTST PKEKKPRTRA  180
PRAPKDESTP MVHRARAPKK RAEVVINGIN MDISDIPIPI CSCTGNPQQC YRWGSGGWQS  240
ACCTMGLSMH PLPMSTKRRG ARIAGRKMSI GAFKKVLEKL ASEGYDFSDP IDLRSYWARH  300
GTNKFVTIR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV35488.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083223.11e-157protein BASIC PENTACYSTEINE2-like
RefseqXP_022845030.11e-157protein BASIC PENTACYSTEINE2-like
TrEMBLA0A2Z7BPF10.0A0A2Z7BPF1_9LAMI; GAGA-binding protein
STRINGXP_009761371.11e-118(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA100482026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.31e-77basic pentacysteine 2