PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV35332.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family ARR-B
Protein Properties Length: 604aa    MW: 66329 Da    PI: 6.6823
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV35332.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.76.2e-29215268155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
  KZV35332.1 215 KPRVVWSVELHQQFVTAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 268
                 79*******************.********************************8 PP
2Response_reg73.39.5e-25331411109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+p+ +++l+++l++  y ev+ +  +e al+ l++++  +D+++ D+ mp+mdG++ll++   e  +lp+i+++a ++++ + + +  Ga 
    KZV35332.1  33 VLVVDDDPTCLRILEKMLRNCLY-EVTKCNRAEIALQFLRDNKngFDIVISDVHMPDMDGFKLLEHVGLEM-DLPVIMMSADDSKNVVMKGVTHGAC 127
                   89*********************.***************888889**********************6644.8************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ +e+l +
    KZV35332.1 128 DYLIKPVRMEALKN 141
                   *********99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363929.2E-17413596IPR017053Response regulator B-type, plant
SuperFamilySSF521722.28E-3430151IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23008.2E-4230154No hitNo description
SMARTSM004487.9E-2931143IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.46832147IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.7E-2233141IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.68E-2634146No hitNo description
SuperFamilySSF466892.87E-20212272IPR009057Homeodomain-like
PROSITE profilePS5129410.611212271IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-30214273IPR009057Homeodomain-like
TIGRFAMsTIGR015577.3E-25215268IPR006447Myb domain, plants
PfamPF002499.2E-8217267IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010082Biological Processregulation of root meristem growth
GO:0010119Biological Processregulation of stomatal movement
GO:0010150Biological Processleaf senescence
GO:0071368Biological Processcellular response to cytokinin stimulus
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MNLGAKPMSF SSSSSPWKSN NGVSDQFPAG LRVLVVDDDP TCLRILEKML RNCLYEVTKC  60
NRAEIALQFL RDNKNGFDIV ISDVHMPDMD GFKLLEHVGL EMDLPVIMMS ADDSKNVVMK  120
GVTHGACDYL IKPVRMEALK NIWQHVVRKK KNEWRDKDLD LSGSAGDGAM QQKSSDDVEY  180
SPSTNEGNWK SAKKRKEKEE EDEGEDRDEA STLKKPRVVW SVELHQQFVT AVNQLGIDKA  240
VPKKILELMN VPGLTRENVA SHLQKYRLYL RRLSGASPHN NGLGNAFLGD AGFGSISSLS  300
GLDFQALAAS GQLPQHGLVS LGRVAAKPAI SVDQRNIFSF ENPKLRFLEG QQQQINNGKP  360
VNLLHGIPTN MDSKQLATLH QSAQARQNKS TPVVMSQAIP SGVAARSKMD GVHGPAYTSV  420
DFPRTQRAES AANSFSLVSD SGISCLTSKG MAQNEVNSET KRSRNVYLNH DIFHEQNIGR  480
NQEWGVQNVG PAFDSAQLLH LPGALDVSSA VLIPPGFSSN QINKATALVG STPGIGQQIN  540
SSLANNSLVI KADKLPEMGF QNVLFNEQLG QQDLMTLYKP QQAGIEPVEN EFGFDEYHLD  600
NLIV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-21214274464ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00054PBMTransfer from AT4G16110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV35332.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071399.10.0two-component response regulator ARR2 isoform X1
SwissprotQ9ZWJ91e-176ARR2_ARATH; Two-component response regulator ARR2
TrEMBLA0A2Z7BL270.0A0A2Z7BL27_9LAMI; Two-component response regulator
STRINGSolyc05g054390.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31912450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-167response regulator 2
Publications ? help Back to Top
  1. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  2. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  3. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  4. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  5. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  6. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  7. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  8. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  9. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]