PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV35176.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family ARF
Protein Properties Length: 657aa    MW: 73906.8 Da    PI: 6.152
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV35176.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.56.2e-24130231199
                 EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                 f+kvlt sd++++g +++ +k+a+e+     +++++ +++l+ +d++  +W +k+i+r++++r++lt+GW+ Fv +++L +gD++vF   + +++el+v
  KZV35176.1 130 FCKVLTASDTSTHGGFSVLRKHANEClppldMSQQTPTQELVAKDLHEVEWHFKHIFRGQPRRHLLTTGWSTFVTSKRLIAGDSFVFL--RGENGELRV 226
                 99*****************************555556679************************************************..449999*** PP

                 EEE-S CS
          B3  95 kvfrk 99 
                 +v+r+
  KZV35176.1 227 GVRRH 231
                 ***98 PP
2Auxin_resp100.62.1e-33256335183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+ha+ t+++F ++Y+Pr+  s+F++ ++k+++a+++++ vGmRfkm+fe+eds+ rr+sGt+vgv+d ++++W++SkWrsLk
  KZV35176.1 256 ASHAVLTQTPFVIYYKPRT--SQFIIGLNKYLEAVNHEFGVGMRFKMRFEGEDSPDRRFSGTIVGVED-KSSNWEDSKWRSLK 335
                 68999*************6..9**********************************************.777*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.14E-41115259IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-41122245IPR015300DNA-binding pseudobarrel domain
CDDcd100171.51E-20128230No hitNo description
PfamPF023621.1E-21130231IPR003340B3 DNA binding domain
SMARTSM010192.2E-22130232IPR003340B3 DNA binding domain
PROSITE profilePS5086311.688130232IPR003340B3 DNA binding domain
PfamPF065073.0E-31256335IPR010525Auxin response factor
PfamPF023091.6E-7540590IPR033389AUX/IAA domain
SuperFamilySSF542777.85E-13548630No hitNo description
PROSITE profilePS5174526.611554635IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2406.1E-4577618No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MANTGSFCQQ QSRFLVEGTG GKDMLYTELW KACAGPLVDV PKVGERVYYF PQGHMEQLEA  60
STNQELNQRI PMFNLPSKIL CRVFNIQLLA EKDTDEVYAQ ITLMPEADQI EPRSLDNSVE  120
EPPRPAVHSF CKVLTASDTS THGGFSVLRK HANECLPPLD MSQQTPTQEL VAKDLHEVEW  180
HFKHIFRGQP RRHLLTTGWS TFVTSKRLIA GDSFVFLRGE NGELRVGVRR HTRQQSSMPS  240
SVISSQSMHL GVLATASHAV LTQTPFVIYY KPRTSQFIIG LNKYLEAVNH EFGVGMRFKM  300
RFEGEDSPDR RFSGTIVGVE DKSSNWEDSK WRSLKVQWDE HASIPRPETV SPWEIEPFVV  360
STPTGIIQTQ MMKHKRLRSH VEIPIPETPT STVSTAWNLG HESYQINCNL EEQGIKHNAI  420
TQATPNLNVS SSVIAEEMEE SKGASARSII LNPPANSPLS SQNEAKKFDT SVTCRLFGFD  480
LKSPSLVNLC ENSPKSLDTP NDVGAVYVPG TVLSCYSEQK SGGFFKDLTD MKQDQLQAPT  540
KEVQSRQNQS HSFRSRTKVQ MQGVAVGRAV DLTALNGYEE LITEIEEMFS IKGELRPRNK  600
LEIVFTDDEG DMMLMGDDPW PEFCNMVRRI FICPSQDVKK MKGTKIPLPP SAECEED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.02335817355Auxin response factor 1
4ldw_A0.02335817355Auxin response factor 1
4ldw_B0.02335817355Auxin response factor 1
4ldx_A0.02335817355Auxin response factor 1
4ldx_B0.02335817355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV35176.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082305.10.0auxin response factor 9
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A2Z7BLK90.0A0A2Z7BLK9_9LAMI; Auxin response factor
STRINGMigut.A00611.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23472450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.20.0auxin response factor 9