PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV35156.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

C2H2

Protein Properties

Length: 462aa MW: 51112.6 Da PI: 9.0191

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV35156.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.3	2.7e-05	26	48	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H KZV35156.1 26 FICEICNKGFQRDQNLQLHRRGH 48 89*******************88 PP
2	zf-C2H2	12	0.00064	102	124	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + KZV35156.1 102 WKCEKCSKKYAVQSDWKAHSKIC 124 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.18E-7	25	48	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.2E-5	25	48	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.845	26	48	IPR007087	Zinc finger, C2H2
Pfam	PF12171	5.4E-5	26	48	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.022	26	48	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	28	48	IPR007087	Zinc finger, C2H2
SMART	SM00355	79	67	97	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	4.8E-5	90	123	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.18E-7	97	122	No hit	No description
SMART	SM00355	140	102	122	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 462 aa Download sequence Send to blast
MRHVYSDPDA EVIALSPKSL MATNRFICEI CNKGFQRDQN LQLHRRGHNL PWKLKQRTNK 60 EVKKKVYICP EKTCVHHDPS RALGDLTGIK KHYSRKHGEK KWKCEKCSKK YAVQSDWKAH 120 SKICGTREYK CDCGTLFSRK DSFITHRAFC DALAEESARF TPVNPPVNLN LRNELLMTNN 180 LHNAANSQFP NMFRPELGGL ESGNQMSIDN LQKPRLPLWL DNTNPHLNLN PIQNPSSSNP 240 NFLASSSTTL PELVQMAAAS QNQWLINRSS GALKQEEEDK GNMCEAISSL YYSNTSSQHP 300 QETNHPSAPM SATALLQKAA QMGSTRSNNS AVFGTGFGLM SSNFSSIGNF NPLNQPRNEV 360 CQMNLGKPEN LNGLMASTSA SALTSNHGGD VPRLFESSNS LMGDSSPLIM IPNNKGKQAQ 420 SGSVIEGESS LTRDFLGVGG NELAKFASMG SSMDLTHYSR NM

Sequence ? help Back to Top

Protein Sequence Length: 462 aa Download sequence Send to blast

MRHVYSDPDA EVIALSPKSL MATNRFICEI CNKGFQRDQN LQLHRRGHNL PWKLKQRTNK  60
EVKKKVYICP EKTCVHHDPS RALGDLTGIK KHYSRKHGEK KWKCEKCSKK YAVQSDWKAH  120
SKICGTREYK CDCGTLFSRK DSFITHRAFC DALAEESARF TPVNPPVNLN LRNELLMTNN  180
LHNAANSQFP NMFRPELGGL ESGNQMSIDN LQKPRLPLWL DNTNPHLNLN PIQNPSSSNP  240
NFLASSSTTL PELVQMAAAS QNQWLINRSS GALKQEEEDK GNMCEAISSL YYSNTSSQHP  300
QETNHPSAPM SATALLQKAA QMGSTRSNNS AVFGTGFGLM SSNFSSIGNF NPLNQPRNEV  360
CQMNLGKPEN LNGLMASTSA SALTSNHGGD VPRLFESSNS LMGDSSPLIM IPNNKGKQAQ  420
SGSVIEGESS LTRDFLGVGG NELAKFASMG SSMDLTHYSR NM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	9e-37	98	164	3	69	Zinc finger protein JACKDAW
5b3h_F	9e-37	98	164	3	69	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that, together with JKD, regulates tissue boundaries and asymmetric cell division in roots by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action (PubMed:25829440). Confines CYCD6 expression to the cortex-endodermis initial/daughter (CEI/CEID) tissues (PubMed:25829440). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:24821766, ECO:0000269\|PubMed:25829440}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV35156.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022850979.1	0.0	protein indeterminate-domain 9-like
Refseq	XP_022850980.1	0.0	protein indeterminate-domain 9-like
Refseq	XP_022850981.1	0.0	protein indeterminate-domain 9-like
Refseq	XP_022850982.1	0.0	protein indeterminate-domain 9-like
Swissprot	Q944L3	1e-112	IDD9_ARATH; Zinc finger protein BALDIBIS
TrEMBL	A0A2Z7BLI8	0.0	A0A2Z7BLI8_9LAMI; Zinc finger protein JACKDAW-like
STRING	PGSC0003DMT400008694	1e-175	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	1e-95	C2H2-like zinc finger protein

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]