PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV35139.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | LBD | ||||||||
Protein Properties | Length: 195aa MW: 21613.7 Da PI: 5.7312 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 134.1 | 5.3e-42 | 27 | 127 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+C+++C+lapyfp ++p kf +h++FGasn++kll++lpe+ r da+ss+vyeA+ar+rdPvyG++g i +lq+q++ l+++la++++ KZV35139.1 27 PCAACKILRRRCVEKCILAPYFPPNDPIKFTTAHRVFGASNIIKLLQDLPEQLRADAVSSMVYEANARLRDPVYGCAGAICQLQKQINLLQEQLAKAQA 125 7************************************************************************************************99 PP DUF260 100 el 101 +l KZV35139.1 126 QL 127 85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.039 | 26 | 127 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.9E-42 | 27 | 124 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MEFSKSTPVA TYLPSPSPPL QSVIVTPCAA CKILRRRCVE KCILAPYFPP NDPIKFTTAH 60 RVFGASNIIK LLQDLPEQLR ADAVSSMVYE ANARLRDPVY GCAGAICQLQ KQINLLQEQL 120 AKAQAQLVNM HCQYTNLMAF ICMEMTQPIT GTISSSFDDQ QSFDNLNSYQ TNTSSIGLDE 180 NNNTNGNSLW ELLST |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-42 | 26 | 132 | 10 | 116 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-42 | 26 | 132 | 10 | 116 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV35139.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022875086.1 | 4e-83 | LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 3e-63 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A2Z7BKX0 | 1e-143 | A0A2Z7BKX0_9LAMI; LOB domain-containing protein 11-like | ||||
STRING | Migut.N02625.1.p | 7e-78 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 1e-56 | LOB domain-containing protein 1 |