PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV35121.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

C2H2

Protein Properties

Length: 454aa MW: 50335.5 Da PI: 9.9688

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV35121.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.9	7.5e-05	223	246	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ Cg+ F ++L+ H+++ H KZV35121.1 223 FSCTQCGEIFVKAEYLELHQSVrH 246 89******************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.014	223	247	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	225	246	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	1.53E-23	248	452	No hit	No description
Gene3D	G3DSA:3.90.228.10	2.0E-12	251	451	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence Send to blast
MAAKRRISRN KPKEIQTNKY HCRHSQIKHQ DDQKPHSWAA VRSLFTCKYL QPQQQEQQQK 60 TKQEPKQNHH KHTHGEENVV KQKHISQHAK NEREISLEES RKKTRCSGSL CSNTKVTQRP 120 ENLEAQKIKR TAMLMTSSCN SSNRSMKASA SLYGSAVGSI NSASTSSSAS SSLTAPTVTS 180 PSSFPGTFRN MGFRKLSGCY ECRMVVDPVL AMTRDPSLRA TIFSCTQCGE IFVKAEYLEL 240 HQSVRHAVCE LGPDDTSKNI VEIIFQSSWL KKEAPVCKID RILKVQNTPT TISRFEDYRD 300 TIKTKATRLP KKHPRCLADG NELLRFHCTT LMCSLGLNGS SNLCNSIPTC SVCSIIRNGF 360 KVATGVSTKG ILTTATSGKA HDSADMLVGR GKRAMLVCRV IAGRVKRKVE LSAGSADDYD 420 SVAGDSGVYS NLDELHVFNP RAILPCFVVI YGGF

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence Send to blast

MAAKRRISRN KPKEIQTNKY HCRHSQIKHQ DDQKPHSWAA VRSLFTCKYL QPQQQEQQQK  60
TKQEPKQNHH KHTHGEENVV KQKHISQHAK NEREISLEES RKKTRCSGSL CSNTKVTQRP  120
ENLEAQKIKR TAMLMTSSCN SSNRSMKASA SLYGSAVGSI NSASTSSSAS SSLTAPTVTS  180
PSSFPGTFRN MGFRKLSGCY ECRMVVDPVL AMTRDPSLRA TIFSCTQCGE IFVKAEYLEL  240
HQSVRHAVCE LGPDDTSKNI VEIIFQSSWL KKEAPVCKID RILKVQNTPT TISRFEDYRD  300
TIKTKATRLP KKHPRCLADG NELLRFHCTT LMCSLGLNGS SNLCNSIPTC SVCSIIRNGF  360
KVATGVSTKG ILTTATSGKA HDSADMLVGR GKRAMLVCRV IAGRVKRKVE LSAGSADDYD  420
SVAGDSGVYS NLDELHVFNP RAILPCFVVI YGGF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV35121.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027091547.1	1e-170	uncharacterized protein LOC113712355
TrEMBL	A0A2Z7BKL1	0.0	A0A2Z7BKL1_9LAMI; Uncharacterized protein
STRING	Migut.C01171.1.p	1e-169	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10723	15	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-102	C2H2-like zinc finger protein