PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV35094.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

C2H2

Protein Properties

Length: 498aa MW: 54897.6 Da PI: 9.2906

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV35094.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	3e-05	61	83	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H KZV35094.1 61 FICEICNKGFQRDQNLQLHRRGH 83 89*******************88 PP
2	zf-C2H2	12.8	0.00037	138	160	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ KZV35094.1 138 WKCEKCSKKYAVQSDWKAHSKTC 160 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.5E-5	60	83	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.85E-7	60	83	No hit	No description
SMART	SM00355	0.022	61	83	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.845	61	83	IPR007087	Zinc finger, C2H2
Pfam	PF12171	6.0E-5	61	83	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	63	83	IPR007087	Zinc finger, C2H2
SMART	SM00355	110	103	133	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.2E-4	125	159	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.85E-7	133	158	No hit	No description
SMART	SM00355	140	138	158	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence Send to blast
MSGDVFSVPI SSTKIFPQEL EQNPNPKPSS NKKKRNLPGT PDPDAEVIAL SPNTLMAKNR 60 FICEICNKGF QRDQNLQLHR RGHNLPWKLK QRANKDQIKK KVYICPEKTC VHHDPARALG 120 DLTGVKKHFS RKHGEKKWKC EKCSKKYAVQ SDWKAHSKTC GTREYKCDCG TLFSRRDSFI 180 THRAFCDALA EENSRITTSA PNLNFSNDSN SDMMNSQLNR NSLLDHHQQK PRLSLWLDLQ 240 TNSQLINSNP IDHNSNLYIP SNNSPSFPDQ MMQMASNFGP NYANLSLSPL PPPQNQLKEE 300 TIMNKGSCGS TLMADSLASL YNSDQNQTNT SSKSSNPIPM SATALLQKAA QMGSTKSHQS 360 LFGNSTTVGL MNSSSSSSAS PSANTLTFNN PFTQNRSELH QVFSKNPDQV NVNLAMKETS 420 ADKMMNFSSC TSTLMNLDSG LRGVHQSSLT RDFLGMGGGD DSGGGGGGPM FFPQELANLA 480 SMSSAMVMSH FSSNHQLS

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence Send to blast

MSGDVFSVPI SSTKIFPQEL EQNPNPKPSS NKKKRNLPGT PDPDAEVIAL SPNTLMAKNR  60
FICEICNKGF QRDQNLQLHR RGHNLPWKLK QRANKDQIKK KVYICPEKTC VHHDPARALG  120
DLTGVKKHFS RKHGEKKWKC EKCSKKYAVQ SDWKAHSKTC GTREYKCDCG TLFSRRDSFI  180
THRAFCDALA EENSRITTSA PNLNFSNDSN SDMMNSQLNR NSLLDHHQQK PRLSLWLDLQ  240
TNSQLINSNP IDHNSNLYIP SNNSPSFPDQ MMQMASNFGP NYANLSLSPL PPPQNQLKEE  300
TIMNKGSCGS TLMADSLASL YNSDQNQTNT SSKSSNPIPM SATALLQKAA QMGSTKSHQS  360
LFGNSTTVGL MNSSSSSSAS PSANTLTFNN PFTQNRSELH QVFSKNPDQV NVNLAMKETS  420
ADKMMNFSSC TSTLMNLDSG LRGVHQSSLT RDFLGMGGGD DSGGGGGGPM FFPQELANLA  480
SMSSAMVMSH FSSNHQLS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	4e-37	134	202	3	71	Zinc finger protein JACKDAW
5b3h_F	4e-37	134	202	3	71	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV35094.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011094681.1	0.0	protein indeterminate-domain 9
Swissprot	Q9SCQ6	1e-114	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	A0A2Z7BL91	0.0	A0A2Z7BL91_9LAMI; Uncharacterized protein
STRING	Migut.J00556.1.p	1e-178	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	2e-96	C2H2-like zinc finger protein

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]