PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV35036.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 357aa    MW: 40705.6 Da    PI: 10.1578
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV35036.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.8e-1759105148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd+ l++av+ + g++Wk+Ia+ ++ +R++ qc +rwqk+l
       KZV35036.1  59 KGGWTPEEDDTLKEAVTVFKGKSWKKIAEFFP-HRSEVQCLHRWQKVL 105
                      688*****************************.************986 PP
2Myb_DNA-binding59.95.6e-19111157148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd+++ ++v+++G+  W+ Ia+ ++ gR +kqc++rw+++l
       KZV35036.1 111 KGPWTQEEDDKISELVAKYGPTKWSVIAKSLP-GRIGKQCRERWHNHL 157
                      79******************************.*************97 PP
3Myb_DNA-binding48.52e-15163206146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++ WT eE++ l++a+  +G++ W+  a+ ++ gRt++++k++w++
       KZV35036.1 163 KDVWTMEEELTLLNAHCVHGNK-WAELAKLLP-GRTDNSIKNHWNS 206
                      578*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.99254105IPR017930Myb domain
SMARTSM007172.2E-1458107IPR001005SANT/Myb domain
PfamPF002495.4E-1559105IPR001005SANT/Myb domain
SuperFamilySSF466895.46E-1560115IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.8E-2061115IPR009057Homeodomain-like
CDDcd001679.81E-1262105No hitNo description
PROSITE profilePS5129431.455106161IPR017930Myb domain
SuperFamilySSF466891.12E-30108204IPR009057Homeodomain-like
SMARTSM007171.3E-17110159IPR001005SANT/Myb domain
PfamPF002492.3E-18111157IPR001005SANT/Myb domain
CDDcd001679.75E-15113157No hitNo description
Gene3DG3DSA:1.10.10.603.4E-27116165IPR009057Homeodomain-like
SMARTSM007172.2E-12162210IPR001005SANT/Myb domain
PROSITE profilePS5129418.171162212IPR017930Myb domain
PfamPF002491.2E-13163206IPR001005SANT/Myb domain
CDDcd001671.06E-8166208No hitNo description
Gene3DG3DSA:1.10.10.602.1E-21166211IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MTEVKPDDFF IENKQFTAAS TSSVSDNSSS AASVPLSIRS PINASPAYRR TTGPIRRAKG  60
GWTPEEDDTL KEAVTVFKGK SWKKIAEFFP HRSEVQCLHR WQKVLNPELV KGPWTQEEDD  120
KISELVAKYG PTKWSVIAKS LPGRIGKQCR ERWHNHLNPN IKKDVWTMEE ELTLLNAHCV  180
HGNKWAELAK LLPGRTDNSI KNHWNSSLKK KYDFYLATGN LPTVAKHVSR DSGSDDNRTS  240
LNGEPPFVSN RGTHISILES SGTTGAQKVE DGKDAAAITP KIMILLPQLL VQKFRLSYLR  300
ALIVRRWHQK QLLYNQKKNL RFRGTEYMTM PINTIHMVLD RIGMFLHMEH YITCHHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-68582115158MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-68582115158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV35036.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene, auxin (IAA), jasmonic acid (JA) and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077474.11e-137transcription factor MYB3R-3-like isoform X1
RefseqXP_011077475.11e-137transcription factor MYB3R-3-like isoform X1
RefseqXP_011077476.11e-137transcription factor MYB3R-3-like isoform X1
RefseqXP_020549498.11e-137transcription factor MYB3R-3-like isoform X1
RefseqXP_020549499.11e-137transcription factor MYB3R-3-like isoform X1
RefseqXP_020549500.11e-137transcription factor MYB3R-3-like isoform X1
RefseqXP_020549501.11e-137transcription factor MYB3R-3-like isoform X1
RefseqXP_020549502.11e-137transcription factor MYB3R-3-like isoform X1
RefseqXP_020549503.11e-137transcription factor MYB3R-3-like isoform X2
SwissprotQ8H1P91e-113MB3R3_ARATH; Transcription factor MYB3R-3
TrEMBLA0A2Z7BL710.0A0A2Z7BL71_9LAMI; Uncharacterized protein
STRINGMigut.L01945.1.p1e-129(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54612437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-109myb domain protein 3r-5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]