PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV34988.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | C2H2 | ||||||||
Protein Properties | Length: 162aa MW: 18880.5 Da PI: 9.7256 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.9 | 0.00033 | 28 | 50 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C + F+++ L H+++H KZV34988.1 28 YSCCFCRREFRSSQALGGHMNVH 50 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.6E-6 | 25 | 54 | No hit | No description |
PROSITE profile | PS50157 | 10.741 | 28 | 55 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 30 | 50 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MEHHTAPNYS MRNPSSFQEL VIWPPRFYSC CFCRREFRSS QALGGHMNVH RRDRAKLKQQ 60 HSPTPSPPDQ TSRLQKDSDY FRGLQMFPSF VSAGEHEMIP RPLFHARESF QETAVSCKRI 120 RKSDRNLPCL CRDLFANCKK ISGSMEDVDL ELRLGPNPPT RR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 5e-11 | 23 | 50 | 2 | 29 | superman protein |
2l1o_A | 5e-11 | 23 | 50 | 2 | 29 | Transcriptional regulator SUPERMAN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 50 | 58 | RRDRAKLKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV34988.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2Z7BN18 | 1e-117 | A0A2Z7BN18_9LAMI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2110 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06070.1 | 6e-22 | C2H2 family protein |