PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV34828.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | FAR1 | ||||||||
Protein Properties | Length: 170aa MW: 19684.3 Da PI: 10.3629 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 60.6 | 4.7e-19 | 12 | 94 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA ++GF +r+ +s+ks+r+g+i++r + C + ++ +++ ++ r gC+ +l vk+e+ g+w+v k++ +HnH+l+ KZV34828.1 12 FYEEYAGRIGFLTRTLSSRKSERDGSIISRGLGCRGNRDVQSPSHD------MGQKRREGCTSMLIVKRESIGRWVVRKFVRDHNHPLV 94 **********************************877776666655......6778899****************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.7E-16 | 12 | 94 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MIFDSEDAAR TFYEEYAGRI GFLTRTLSSR KSERDGSIIS RGLGCRGNRD VQSPSHDMGQ 60 KRREGCTSML IVKRESIGRW VVRKFVRDHN HPLVISSPKK RPTFDEKDKT IQDLTAELRL 120 KKRLSAAYRD QLLALMRDVE NHNDSLTTQL QTIRSNLKEI DARRDDLPNH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV34828.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011073902.1 | 3e-88 | protein FAR-RED IMPAIRED RESPONSE 1 isoform X2 | ||||
Swissprot | Q9SZL8 | 1e-13 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A2G9GDY9 | 3e-88 | A0A2G9GDY9_9LAMI; Uncharacterized protein | ||||
STRING | Migut.N03107.1.p | 3e-82 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13099 | 17 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 1e-51 | FAR1 family protein |
Publications ? help Back to Top | |||
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