PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV34788.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

TCP

Protein Properties

Length: 280aa MW: 29696.3 Da PI: 9.7601

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV34788.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	119.3	4.8e-37	41	158	3	112
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssasnsssg.......... 88 +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++a+++ ++ss + ++ +s+ KZV34788.1 41 KKKAPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPATFStlsPSSSSALELKHCHSQpvltptpfil 139 799************************************************************999997775432222222222222225666654444 PP TCP 89 .........kaaksaakskksqksaasalnlak 112 + ++++++l k KZV34788.1 140 gkrlrpdvdD--------------DHQHNHLPK 158 4444333331..............333333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.892	46	100	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	2.1E-33	46	148	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MSTSAAEGNS GGGALAILDP SHRLRHPATT NATNAAALTV KKKAPAKDRH SKVDGRGRRI 60 RMPIICAARV FQLTRELGHK SDGQTIEWLL RQAEPSIIAA TGTGTTPATF STLSPSSSSA 120 LELKHCHSQP VLTPTPFILG KRLRPDVDDD HQHNHLPKEE SASAAVGPSV PAGGFWALPA 180 RPDFGQVWSF AAAPPAELLA AAAAGNSPHH QHHHQKLHST ASFRFLQQQQ PLGLAEASAA 240 RVGNYLPIAH VQGHHLNLLA SLSGPASQSS EQTREDDNVN

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV34788.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022868503.1	1e-125	transcription factor TCP7-like
Refseq	XP_022868504.1	1e-125	transcription factor TCP7-like
Swissprot	Q9FMX2	3e-78	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A2G9GZB9	1e-109	A0A2G9GZB9_9LAMI; Uncharacterized protein
TrEMBL	A0A4D8ZI28	1e-109	A0A4D8ZI28_SALSN; Transcription factor TCP21 (Protein CCA1 HIKING EXPEDITION)
STRING	Solyc04g009180.1.1	6e-88	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3951	22	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	7e-57	TCP family protein