PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV34775.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family HD-ZIP
Protein Properties Length: 667aa    MW: 74375.6 Da    PI: 6.6661
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV34775.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox629e-202479156
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                r++ +++t++q+++Le++F+++++p++++r +L+++l L  rq+k+WFqNrR+++k
  KZV34775.1 24 RKRYHRHTAHQIQTLESMFKECPHPDEKTRNQLSRELALHPRQIKFWFQNRRTQMK 79
                688899***********************************************999 PP
2START1641.1e-512254502206
                 HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
       START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                 +a  a++el+++ +++ep+Wv+ss    e++++  + + f++ ++       ++e +rasgvv+m+  +lv +++    +W e+++    +a t+ vis
  KZV34775.1 225 MAANAMNELIRLLQSNEPLWVRSSrdgrEILDSGNYERFFPRPNShlrnpeTRMESSRASGVVIMNGLDLVDKFMAAD-KWVEMFPtivsRARTICVIS 322
                 57889*******************999988888888888888777999******************************.******************** PP

                 TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX. CS
       START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp. 177
                 sg      g+lqlm+aelq+l+ l p R  +f+R+++q  +g+w+ivdvS d +q+ ++  s+ Ra++lpSg+l+++++ng+skv w+eh++ +++ p 
  KZV34775.1 323 SGilgsqsGTLQLMYAELQVLTALLPiRQLYFLRFCQQIDQGTWAIVDVSYDLPQQESQFTSLCRAHKLPSGCLLQEMPNGYSKVSWMEHWEIEDKDPv 421
                 *********************************************************9999************************************** PP

                 HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 178 hwllrslvksglaegaktwvatlqrqcek 206
                 h l+r l+++g+a+ga +w++tlqr ce+
  KZV34775.1 422 HGLYRDLIQRGVAFGAERWLSTLQRICER 450
                 ***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.38E-20981IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-221183IPR009057Homeodomain-like
PROSITE profilePS5007117.6862181IPR001356Homeobox domain
SMARTSM003891.5E-182285IPR001356Homeobox domain
CDDcd000869.69E-182382No hitNo description
PfamPF000462.6E-172479IPR001356Homeobox domain
PROSITE patternPS0002705679IPR017970Homeobox, conserved site
PROSITE profilePS5084846.46215453IPR002913START domain
SuperFamilySSF559612.2E-30216451No hitNo description
CDDcd088753.44E-103219449No hitNo description
SMARTSM002349.0E-38224450IPR002913START domain
PfamPF018529.3E-43225450IPR002913START domain
Gene3DG3DSA:3.30.530.203.5E-4321414IPR023393START-like domain
SuperFamilySSF559614.4E-17473646No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MEFGGDGGGS SGGDHPDATD NRRRKRYHRH TAHQIQTLES MFKECPHPDE KTRNQLSREL  60
ALHPRQIKFW FQNRRTQMKT QHERADNCAL RAENDKIRCE NIAIREALKN VICPSCGGPP  120
VSEDTYFDEQ KLRFENSCLK EELDRVSSIA SKYIGRPISQ LPSVQPIHVS SLDLSMASFG  180
GHGGLVPDHS LDLDLLPGNS SGVVPSLVFP PVIISDMDKS VMTEMAANAM NELIRLLQSN  240
EPLWVRSSRD GREILDSGNY ERFFPRPNSH LRNPETRMES SRASGVVIMN GLDLVDKFMA  300
ADKWVEMFPT IVSRARTICV ISSGILGSQS GTLQLMYAEL QVLTALLPIR QLYFLRFCQQ  360
IDQGTWAIVD VSYDLPQQES QFTSLCRAHK LPSGCLLQEM PNGYSKVSWM EHWEIEDKDP  420
VHGLYRDLIQ RGVAFGAERW LSTLQRICER FACLMVTGSS TTDVGSGVIP SAEGKRSMMK  480
LAQRMVRSFC SSINPSNGQQ WTTISRLSEC EVRATSHKTT DPGQPSGVVL CAAATLWLPV  540
PPQNVFNFLR DERTRLQWDV LSNQNPVQEV AHIANGSHPW NCISVLRAFS SGQNNMLILQ  600
ESCIDASGSL IVYCPVDIPA IEIAMAGDDP SYIPLLPSGF TISPSGHPTE EGLRLAPPHP  660
SLPRVHS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which acts as positive regulator of drought stress tolerance. Can transactivate CIPK3, NCED3 and ERECTA (PubMed:18451323). Transactivates several cell-wall-loosening protein genes by directly binding to HD motifs in their promoters. These target genes play important roles in coordinating cell-wall extensibility with root development and growth (PubMed:24821957). Transactivates CYP74A/AOS, AOC3, OPR3 and 4CLL5/OPCL1 genes by directly binding to HD motifs in their promoters. These target genes are involved in jasmonate (JA) biosynthesis, and JA signaling affects root architecture by activating auxin signaling, which promotes lateral root formation (PubMed:25752924). Acts as negative regulator of trichome branching (PubMed:16778018, PubMed:24824485). Required for the establishment of giant cell identity on the abaxial side of sepals (PubMed:23095885). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:18451323, ECO:0000269|PubMed:23095885, ECO:0000269|PubMed:24821957, ECO:0000269|PubMed:24824485, ECO:0000269|PubMed:25564655, ECO:0000269|PubMed:25752924}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV34775.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011072039.10.0homeobox-leucine zipper protein HDG11
SwissprotQ9FX310.0HDG11_ARATH; Homeobox-leucine zipper protein HDG11
TrEMBLA0A2Z7BLK00.0A0A2Z7BLK0_9LAMI; Uncharacterized protein
STRINGMigut.O00242.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24902351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khosla A, et al.
    HD-Zip Proteins GL2 and HDG11 Have Redundant Functions in Arabidopsis Trichomes, and GL2 Activates a Positive Feedback Loop via MYB23.
    Plant Cell, 2014. 26(5): p. 2184-2200
    [PMID:24824485]
  3. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]
  4. Cai XT,Xu P,Wang Y,Xiang CB
    Activated expression of AtEDT1/HDG11 promotes lateral root formation in Arabidopsis mutant edt1 by upregulating jasmonate biosynthesis.
    J Integr Plant Biol, 2015. 57(12): p. 1017-30
    [PMID:25752924]
  5. Yu LH, et al.
    Arabidopsis EDT1/HDG11 improves drought and salt tolerance in cotton and poplar and increases cotton yield in the field.
    Plant Biotechnol. J., 2016. 14(1): p. 72-84
    [PMID:25879154]
  6. Zhu Z, et al.
    Overexpression of AtEDT1/HDG11 in Chinese Kale (Brassica oleracea var. alboglabra) Enhances Drought and Osmotic Stress Tolerance.
    Front Plant Sci, 2016. 7: p. 1285
    [PMID:27625663]
  7. Liu Y, et al.
    Overexpression of AtEDT1 promotes root elongation and affects medicinal secondary metabolite biosynthesis in roots of transgenic Salvia miltiorrhiza.
    Protoplasma, 2017. 254(4): p. 1617-1625
    [PMID:27915455]
  8. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  9. Lung SC, et al.
    Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors.
    New Phytol., 2018. 218(1): p. 183-200
    [PMID:29288621]
  10. Zheng G, et al.
    Over-Expression of Arabidopsis EDT1 Gene Confers Drought Tolerance in Alfalfa (Medicago sativa L.).
    Front Plant Sci, 2017. 8: p. 2125
    [PMID:29326737]