PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV34037.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | MYB | ||||||||
Protein Properties | Length: 228aa MW: 26500.8 Da PI: 8.4502 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60 | 5e-19 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll ++vk++G g+W+ +ar +g++R +k+c++rw +yl KZV34037.1 16 KGPWTAEEDRLLMEYVKLHGEGRWNNVARLVGLKRNGKSCRLRWVNYL 63 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.1 | 1.5e-16 | 69 | 113 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++ KZV34037.1 69 RGQITPHEESIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 113 7888******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.756 | 11 | 67 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.97E-31 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-17 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-17 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-24 | 17 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.53E-12 | 18 | 63 | No hit | No description |
SMART | SM00717 | 1.4E-14 | 68 | 116 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.043 | 68 | 118 | IPR017930 | Myb domain |
Pfam | PF00249 | 8.6E-14 | 69 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.4E-24 | 71 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.22E-10 | 73 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MAQNMGWGAV GEGWKKGPWT AEEDRLLMEY VKLHGEGRWN NVARLVGLKR NGKSCRLRWV 60 NYLRPDLKRG QITPHEESII LELHARWGNR WSTIARSLPG RTDNEIKNYW RTHFKKQGKP 120 SSITLEKSSA HVLRRQQLQQ QQQRHQQDQI DMNVIMSFML NDEGEYNVPI LNQSVQEISY 180 PSGGVLEEQG LLHSMVSGYS SMPEASTEDM AIWDGGLWNL DDRYHQWS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-26 | 16 | 117 | 27 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV34037.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022849439.1 | 1e-100 | transcription factor WER-like | ||||
Refseq | XP_022849440.1 | 1e-100 | transcription factor WER-like | ||||
TrEMBL | A0A2Z7BIZ9 | 1e-168 | A0A2Z7BIZ9_9LAMI; Myb domain protein 79 isoform 1 | ||||
STRING | cassava4.1_014512m | 5e-90 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24310.1 | 6e-76 | myb domain protein 305 |