PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV33671.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 313aa    MW: 35268.9 Da    PI: 8.71
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV33671.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.2e-161562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT +Ed++l ++++q+G g+W++ +++ g+ R++k+c++rw +yl
       KZV33671.1 15 KGPWTRDEDQKLCEYIEQFGHGSWRALPAKAGLERCGKSCRLRWKNYL 62
                     79********************************************97 PP
2Myb_DNA-binding48.81.6e-1568111146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++ +E++ +++++++lG++ W+ Ia++++ +Rt++++k++w++
       KZV33671.1  68 RGKFSVQEEKTIIRLHALLGNR-WAVIASHLP-KRTDNEVKNYWNT 111
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.0E-23865IPR009057Homeodomain-like
PROSITE profilePS5129416.5681062IPR017930Myb domain
SuperFamilySSF466897.86E-2912109IPR009057Homeodomain-like
SMARTSM007175.0E-131464IPR001005SANT/Myb domain
PfamPF002497.6E-151562IPR001005SANT/Myb domain
CDDcd001671.08E-91762No hitNo description
PROSITE profilePS5129423.30163117IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.8E-2466117IPR009057Homeodomain-like
SMARTSM007171.0E-1567115IPR001005SANT/Myb domain
PfamPF002496.5E-1568111IPR001005SANT/Myb domain
CDDcd001671.51E-1070111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MGRISDSSEK IELKKGPWTR DEDQKLCEYI EQFGHGSWRA LPAKAGLERC GKSCRLRWKN  60
YLRPDIKRGK FSVQEEKTII RLHALLGNRW AVIASHLPKR TDNEVKNYWN TRIKKRLARM  120
GIDPVTHKLK SLNPDGSGQS RLAANLSHMA QWETARLEAE ARLVRESKRL SDLHLQLLRN  180
ATAPPPPPCL DVLRVWLATT ANGSVSGSHE SPTSTLTFST SSNTIPVNGL IDGGSIIENN  240
MVSIDNTCNG FKGKMGNSQQ LFQDNITYPF EHDYIVSSVT DFVSTNHGNI AMEENEEDKS  300
YWNDLLNLLD SPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-29121174108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV33671.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071274.11e-127transcription factor MYB28-like isoform X2
SwissprotQ9LE631e-90MY106_ARATH; Transcription factor MYB106
TrEMBLA0A2Z7BP060.0A0A2Z7BP06_9LAMI; Uncharacterized protein
STRINGMigut.L01264.1.p1e-107(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.11e-88myb domain protein 106