PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV33139.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

C2H2

Protein Properties

Length: 389aa MW: 42008.9 Da PI: 9.3863

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV33139.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.7	8.9e-05	152	174	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 C Cg++F+ ++L++H+ H KZV33139.1 152 ACAECGEVFPKVESLEQHQAIrH 174 599****************9877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	151	174	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.245	151	179	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	6.04E-19	176	385	No hit	No description
Gene3D	G3DSA:3.90.228.10	2.8E-8	177	385	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MAPGTPPANP KRKKRHHKLT KHPASSSWDQ IKSLLTCKQI DEAQIHLPIY ASSCSSICTF 60 RDVVGNTRVV HRSDISPDSS SFGQEASRLL SKKGSHGSSS NRTVNSSSLR SGYGSGAYSG 120 RGMQLRRLSG CYECHAIVDP SMYPLPRTRI CACAECGEVF PKVESLEQHQ AIRHAVSELG 180 PEDSSRNIVE IIFKSSWLKK DSPICKIERI LKVHNTQRTI QRFEDYRDAV KTRATATAKR 240 NARCAADGNE LLRFHCATLT CSLGARGSST LCAAVPGCGV CTIIRHGFQG SKIGGVRTTA 300 SSGRAHDSIG VLATRRAMLV CRVIAGRVKR VGEEAAAGEE EVAAAAAVAG SFDSVSGFAG 360 IYSSLEDLYV FNSRAILPCF VVIYKALEC

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MAPGTPPANP KRKKRHHKLT KHPASSSWDQ IKSLLTCKQI DEAQIHLPIY ASSCSSICTF  60
RDVVGNTRVV HRSDISPDSS SFGQEASRLL SKKGSHGSSS NRTVNSSSLR SGYGSGAYSG  120
RGMQLRRLSG CYECHAIVDP SMYPLPRTRI CACAECGEVF PKVESLEQHQ AIRHAVSELG  180
PEDSSRNIVE IIFKSSWLKK DSPICKIERI LKVHNTQRTI QRFEDYRDAV KTRATATAKR  240
NARCAADGNE LLRFHCATLT CSLGARGSST LCAAVPGCGV CTIIRHGFQG SKIGGVRTTA  300
SSGRAHDSIG VLATRRAMLV CRVIAGRVKR VGEEAAAGEE EVAAAAAVAG SFDSVSGFAG  360
IYSSLEDLYV FNSRAILPCF VVIYKALEC

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV33139.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011074673.1	0.0	uncharacterized protein LOC105159339 isoform X2
TrEMBL	A0A2Z7BI83	0.0	A0A2Z7BI83_9LAMI; Uncharacterized protein
STRING	XP_006473648.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5195	23	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-131	C2H2-like zinc finger protein