PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV32994.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | MYB | ||||||||
Protein Properties | Length: 251aa MW: 28072.3 Da PI: 5.0601 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.7 | 2.1e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l++ ++ +G g+W++ +++ g+ R++k+c++rw +yl KZV32994.1 14 KGPWTAEEDSILINFINWHGHGNWRALPKRAGLLRCGKSCRLRWMNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 48.6 | 1.9e-15 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T eE+e ++ +++qlG++ W+ a++++ gRt++++k+ w++ KZV32994.1 67 RGNFTREEEETIIALHQQLGNK-WSVMAARLP-GRTDNEIKNVWHTN 111 89********************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.0E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.32 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.02E-29 | 10 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.4E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.6E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.82E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 22.516 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.2E-13 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-13 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.83E-9 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MGRAPCCEKM GLKKGPWTAE EDSILINFIN WHGHGNWRAL PKRAGLLRCG KSCRLRWMNY 60 LRPDIKRGNF TREEEETIIA LHQQLGNKWS VMAARLPGRT DNEIKNVWHT NLKKRIARNT 120 RSEPKREQIP ITGFDPKSGN DSEPNSPADS SSVTSSATTT YTAADADGPD PHITAGRNFL 180 EMDESFWSEV FSANDSSEAS DFSTGNEDLE LQFGMEENLF GGDLSMKGGA MDFWLELLNG 240 TEELTGLPAF L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-25 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV32994.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011080041.1 | 6e-94 | transcription factor MYB14 | ||||
TrEMBL | A0A2Z7BEY9 | 0.0 | A0A2Z7BEY9_9LAMI; Myb domain protein 13 | ||||
STRING | POPTR_0005s24550.1 | 2e-86 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 2e-72 | myb domain protein 15 |