PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV32979.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

NAC

Protein Properties

Length: 251aa MW: 28960.3 Da PI: 5.3521

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV32979.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	163.7	6.9e-51	10	138	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 lppGfrF P+deel+++yL kk++++++ ++ e+d++++ePw+Lp ++k +++ewyfFs rd+kyatg r+nrat+sgyWkatgkd+ v++ +++ KZV32979.1 10 LPPGFRFYPSDEELICHYLYKKIANEEVVR-GTLMEIDLHTCEPWQLPDSAKLNSSEWYFFSFRDRKYATGYRTNRATTSGYWKATGKDRMVVDPgTRA 107 79***********************777.78***********88888999**********************************96677 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrle 129 +vg++ktLvfyk+rap+g kt W+mhe+rle KZV32979.1 108 VVGMRKTLVFYKNRAPNGIKTGWIMHEFRLE 138 8*************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.45E-61	8	156	IPR003441	NAC domain
PROSITE profile	PS51005	58.09	10	156	IPR003441	NAC domain
Pfam	PF02365	1.0E-27	11	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MGLRDIGATL PPGFRFYPSD EELICHYLYK KIANEEVVRG TLMEIDLHTC EPWQLPDSAK 60 LNSSEWYFFS FRDRKYATGY RTNRATTSGY WKATGKDRMV VDPGTRAVVG MRKTLVFYKN 120 RAPNGIKTGW IMHEFRLENP HVPPKEDWVL CRVFYKTRCE NTTQNVYNDH LNTSCANLDG 180 GFQNVITSFF SQNPSTSGPD YLLDHQLSQY NIDSINDLDR DPSSSTPRCE DDYGFLFDMN 240 FDDDSNGLIM S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-49	9	156	16	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-49	9	156	16	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-49	9	156	16	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-49	9	156	16	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-49	9	156	19	168	NAC domain-containing protein 19
3swm_B	2e-49	9	156	19	168	NAC domain-containing protein 19
3swm_C	2e-49	9	156	19	168	NAC domain-containing protein 19
3swm_D	2e-49	9	156	19	168	NAC domain-containing protein 19
3swp_A	2e-49	9	156	19	168	NAC domain-containing protein 19
3swp_B	2e-49	9	156	19	168	NAC domain-containing protein 19
3swp_C	2e-49	9	156	19	168	NAC domain-containing protein 19
3swp_D	2e-49	9	156	19	168	NAC domain-containing protein 19
4dul_A	2e-49	9	156	16	165	NAC domain-containing protein 19
4dul_B	2e-49	9	156	16	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269\|PubMed:12837947, ECO:0000269\|PubMed:17122068}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV32979.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269\|PubMed:16854978}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009607926.1	1e-116	PREDICTED: NAC domain-containing protein 21/22-like
Refseq	XP_022879040.1	1e-116	protein CUP-SHAPED COTYLEDON 3-like
Swissprot	Q9S851	1e-61	NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBL	A0A2Z7BHR2	0.0	A0A2Z7BHR2_9LAMI; NAC domain-containing protein 21/22-like
STRING	XP_009607926.1	1e-116	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1882	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28530.1	3e-90	NAC domain containing protein 74

Publications ? help Back to Top
Chen C, et al. Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.). J. Exp. Bot., 2014. 65(17): p. 4943-58 [PMID:24962999] Gonçalves B, et al. A conserved role for CUP-SHAPED COTYLEDON genes during ovule development. Plant J., 2015. 83(4): p. 732-42 [PMID:26119568] Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis. Plant J., 2017. 90(3): p. 435-446 [PMID:28161901] Espinosa-Ruiz A, et al. TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana. Development, 2017. 144(9): p. 1619-1628 [PMID:28320734] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]