PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV32943.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | MYB | ||||||||
Protein Properties | Length: 193aa MW: 22321.8 Da PI: 8.2464 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48 | 2.8e-15 | 11 | 58 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l + ++ G g W++ ar g++Rt+k+c++rw++yl KZV32943.1 11 KGPWTIEEDLILFNHIANNGEGVWNSLARSAGLKRTGKSCRLRWLNYL 58 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.4 | 1.4e-17 | 64 | 107 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++l+ d+++++G++ W++Ia++++ gRt++++k++w++ KZV32943.1 64 RGNITAEEQLLIMDLHAKWGNR-WSKIAKHLP-GRTDNEIKNYWRT 107 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.0E-20 | 5 | 61 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.929 | 6 | 58 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.01E-28 | 9 | 105 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-10 | 10 | 60 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-13 | 11 | 58 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.00E-8 | 13 | 58 | No hit | No description |
PROSITE profile | PS51294 | 25.057 | 59 | 113 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-24 | 62 | 113 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.7E-15 | 63 | 111 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.0E-16 | 64 | 107 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.54E-11 | 68 | 107 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MDRNQESEVR KGPWTIEEDL ILFNHIANNG EGVWNSLARS AGLKRTGKSC RLRWLNYLRP 60 DVRRGNITAE EQLLIMDLHA KWGNRWSKIA KHLPGRTDNE IKNYWRTRIQ KHIKQAESRL 120 LPGQTSENSS DQTSTSTSNL SCRYPTKHTG DPYSPPSFNG SVDNFELPFP HETNDSNIWN 180 MEDIWSMQLL NGD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 9e-25 | 8 | 113 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV32943.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027073189.1 | 3e-98 | myb-related protein 305-like | ||||
Swissprot | P81391 | 6e-90 | MYB05_ANTMA; Myb-related protein 305 | ||||
TrEMBL | A0A2Z7BER1 | 1e-141 | A0A2Z7BER1_9LAMI; Myb-related protein 305-like | ||||
STRING | Migut.H00102.1.p | 7e-94 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27810.1 | 3e-75 | myb domain protein 21 |
Publications ? help Back to Top | |||
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