PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV32904.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | NAC | ||||||||
Protein Properties | Length: 321aa MW: 36815.2 Da PI: 4.9101 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 176.1 | 1e-54 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 lppGfrFhPtdeelv +yL +k++g +el evi+evd+yk+ePwdLp k + +++ ewyf+s+rd+ky++g r+nrat+ gyWkatgkd++v+s ++ KZV32904.1 6 LPPGFRFHPTDEELVAYYLDRKINGGIIEL-EVIPEVDLYKCEPWDLPdKsFLPSKDMEWYFYSPRDRKYPNGLRTNRATRVGYWKATGKDRAVHS-GK 102 79***************************9.99**************96435566888**************************************.99 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 ++vg+kktLv+ykgrap+g +tdWvmheyrl KZV32904.1 103 RAVGMKKTLVYYKGRAPHGIRTDWVMHEYRL 133 9****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.76E-62 | 3 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.441 | 6 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.1E-29 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MGPMTLPPGF RFHPTDEELV AYYLDRKING GIIELEVIPE VDLYKCEPWD LPDKSFLPSK 60 DMEWYFYSPR DRKYPNGLRT NRATRVGYWK ATGKDRAVHS GKRAVGMKKT LVYYKGRAPH 120 GIRTDWVMHE YRLLQFVSGA DQSPLQDSYA LCRVFKKNTI VSKPNETLDR LSTYDNISSA 180 ETSRDETAYD ETIIEDHETG PKFDPSASDL TQGTSTPVNH DLYSHIMTSQ EVNSSVNQFY 240 FPELENVSNF IFQDAMMNPS NIYSSVVSEK NPCPPLALED FPDIDLASAK SISEYMSCDR 300 FRTTTTLEDM FSTYDNFSYK S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-55 | 4 | 163 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-55 | 4 | 163 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-55 | 4 | 163 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-55 | 4 | 163 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-54 | 4 | 163 | 18 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-54 | 4 | 163 | 18 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-54 | 4 | 163 | 18 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-54 | 4 | 163 | 18 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-54 | 4 | 163 | 18 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-54 | 4 | 163 | 18 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-54 | 4 | 163 | 18 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-54 | 4 | 163 | 18 | 174 | NAC domain-containing protein 19 |
4dul_A | 9e-55 | 4 | 163 | 15 | 171 | NAC domain-containing protein 19 |
4dul_B | 9e-55 | 4 | 163 | 15 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00205 | DAP | Transfer from AT1G54330 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV32904.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269|PubMed:25081480}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011095829.1 | 1e-132 | NAC transcription factor 29 | ||||
Swissprot | A4VCM0 | 4e-85 | NAC45_ARATH; NAC domain-containing protein 45 | ||||
TrEMBL | A0A2Z7BEM0 | 0.0 | A0A2Z7BEM0_9LAMI; NAC domain-containing protein 45 | ||||
STRING | Migut.M01499.1.p | 1e-124 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4621 | 24 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54330.1 | 2e-92 | NAC domain containing protein 20 |
Publications ? help Back to Top | |||
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