PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV32873.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family NF-X1
Protein Properties Length: 908aa    MW: 101598 Da    PI: 8.2376
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV32873.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X116.41.9e-05275294120
    zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                 CG H+C  +CH GpC pC++
  KZV32873.1 275 CGVHRCVDICHDGPCHPCRE 294
                 ******************85 PP
2zf-NF-X1171.3e-05464481320
    zf-NF-X1   3 kHkCqklCHeGpCppCpq 20 
                 +HkC ++CH+G C pCp+
  KZV32873.1 464 NHKCPAPCHRGSCAPCPL 481
                 7***************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.12E-5112184No hitNo description
PROSITE patternPS013590113177IPR019786Zinc finger, PHD-type, conserved site
CDDcd060081.55E-5211259No hitNo description
PfamPF014220.0027223240IPR000967Zinc finger, NF-X1-type
SMARTSM004380.051223241IPR000967Zinc finger, NF-X1-type
CDDcd060081.00E-8265313No hitNo description
PfamPF014228.7E-4275293IPR000967Zinc finger, NF-X1-type
SMARTSM004380.025275294IPR000967Zinc finger, NF-X1-type
CDDcd060085.11E-8318361No hitNo description
PfamPF014220.61328346IPR000967Zinc finger, NF-X1-type
SMARTSM004386.3328347IPR000967Zinc finger, NF-X1-type
CDDcd060086.87E-9372421No hitNo description
PfamPF014220.0052382401IPR000967Zinc finger, NF-X1-type
SMARTSM004380.081382402IPR000967Zinc finger, NF-X1-type
CDDcd060081.11E-7425473No hitNo description
PfamPF014220.034435453IPR000967Zinc finger, NF-X1-type
SMARTSM004380.046435454IPR000967Zinc finger, NF-X1-type
CDDcd060087.44E-11452500No hitNo description
PfamPF014220.017462480IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0035462481IPR000967Zinc finger, NF-X1-type
PfamPF0142279548557IPR000967Zinc finger, NF-X1-type
SMARTSM0043897548593IPR000967Zinc finger, NF-X1-type
PfamPF014223630641IPR000967Zinc finger, NF-X1-type
SMARTSM0043845630663IPR000967Zinc finger, NF-X1-type
SMARTSM004380.11673691IPR000967Zinc finger, NF-X1-type
PfamPF014220.43675690IPR000967Zinc finger, NF-X1-type
SMARTSM004380.11736757IPR000967Zinc finger, NF-X1-type
PfamPF014220.98737750IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 908 aa     Download sequence    Send to blast
MDLDPCILIC VLSASEHQIG QPTRSIKDAS PPPPPPPPRS PPILSDSDSD SDSDSNASSL  60
TNSSSHQRHT DLSSSIFQSY ITHSDSSNHG QLDQDLIKIR SFLTSSRSGA LSCLICLERI  120
KPTDPTWSCS SRCFAIFHLL CIQSWALQST TLAATRAVLR AAVIPDENSF VWPCPKCRIE  180
YPKRQTPKNY YCFCGKVQDP EPDPWILPHS CGEICGRALK YNCGHYCLLL CHPGPCPTCP  240
KLVRNKCFCG KVEDVRRCGF KNFSCNGICG KLLECGVHRC VDICHDGPCH PCREKGTYRC  300
QCGKMEMERA CCERDFRCEN PCNKMLGCGR HLCQCGCHEG DCKDCSLQGK RTCPCGKRVY  360
EGTPCDVAVP LCGATCDKLL GCGFHRCPER CHRGPCIETC RTVVTKSCRC GSLKKQVPCF  420
QELTCERKCL KVRDCGRHAC KHRCCDGDCP PCSEVCDKRL RCRNHKCPAP CHRGSCAPCP  480
LMVRISCSCG ETYFEVPCGT EAEQKPPRCP KPCRIPPICG HGPKCKPHRC HYGPCHACRL  540
TCDEEYQCGH KCKLRCHGPK PPPLPEFTLK PKKKKFNHQA EVIPGSPCPP CSELVLRQCV  600
GLHIGAERMM VCSNSAEFSC GNLCGNPLPC GNHYCTYECH SLKSSSSKSD ALRIGDSCEE  660
CCLPCHKVRD STCPHPCPQP CHPGECPPCK TLIKRSCHCG SILHVFECIN FNRMSEKEQM  720
DVRSCKGPCH RKLPNCYHLC PEICHPGPCP SPDKCTKKVT VRCGCRTIKK EWLCHNVQEA  780
YREAGCDPKD VSKNQYGLGL LSCDDYCKSR LKVTDTELHL RNAKPREVKE LDTVNNVAKR  840
RKRKQRVIEE QKISRFQKFV AVSQQFLLFL TVALVVVASA CFGFRGLMQL SDWMNEVETR  900
QRRRYSRE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1839845RRKRKQR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV32873.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076693.10.0NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A2Z7BEJ20.0A0A2Z7BEJ2_9LAMI; Uncharacterized protein
STRINGXP_009586602.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93951921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors