PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV32850.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

GRAS

Protein Properties

Length: 658aa MW: 72364 Da PI: 6.3678

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV32850.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	317.9	2.2e-97	300	657	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 +++L+e+Ae v++g++ laqa+Larl+++ s+ +p+qR+a yf eA+++ l++ + l + +p + s + ++ a+klfse+sP+ +f+++t+Nq KZV32850.1 300 IDQLYEAAELVETGNFVLAQAILARLNHQLSSLNKPFQRAALYFNEAMESVLHG--NDLTSEAAPLPFS---LIFRIGAYKLFSEISPLTQFTNFTCNQ 393 689************************************************9..8899889999998...*********************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL....r 195 a+le +eg +r+Hi+Dfdi++G+QW++L+q+L+ R+eg+ sl+iT+++sp+++++ el ++e+L fA+e++++fef+vl ++++l++++ + KZV32850.1 394 AVLEVLEGFNRIHIVDFDIGYGVQWASLMQELSFRSEGTLSLKITAIASPSTHDQLELCLVHENLYLFANEINIKFEFQVL---NIDSLNYSSWcipfD 489 ****************************************************************************9...555555544322449 PP GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294 v+++Ea aVnl + + ++ +++++s vL++vk+lsPk+vv +++ +d+++ +++ ++++al+ ys l++sl+a +s++ +k+E++l+++ i KZV32850.1 490 VSEKEAFAVNLPVGSFATF--KLPVPS----VLHFVKQLSPKIVVSMDRGCDRTDLPLAIHIIHALQSYSNLLESLNAI-NMKSDALHKIEKFLFQPGI 581 999******999998..555555....*****************************************776.6799*********** PP GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 + +v+ + ++ + +Wr+ ++++GF+pvp+s+++++qa++++++++ +gy+ve+++ +lvl W++++L svSaW+ KZV32850.1 582 KRIVTGRFRS----PGKTLHWRSLFHSSGFTPVPFSSFTESQAQCVVKRTSLRGYQVEKRQLALVLSWQRKELASVSAWK 657 987777....99999**********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	42.779	273	637	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.6E-95	300	657	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 658 aa Download sequence Send to blast
MEHFYHSLQT ISQWRQDSTT ATSSSAGAGS VLLLVQPHIE IGGGGGAAYA CAMDDWESVL 60 SEPLPASSGQ ELSMLHLIMG DVADHSVGGV NKVLQISGGL LPSDVESGSS FGAAEQASGG 120 DSVSQFGTSF MLPNPAFIHC LSFPNNSFTA EKIDTLASNS SPNFLSDIKP SNYHNTVSSS 180 ASNNLGAFFN AKVLVNQHVA HSTENRSFLL PAQQQEHIPL VPPRAKRYNL SQSTGGIPKG 240 WSLDTGQELF LGREQLPCQH PLVFPHNLHQ RPLAGMGVDP NQNTGRDELG QCDQQQQAII 300 DQLYEAAELV ETGNFVLAQA ILARLNHQLS SLNKPFQRAA LYFNEAMESV LHGNDLTSEA 360 APLPFSLIFR IGAYKLFSEI SPLTQFTNFT CNQAVLEVLE GFNRIHIVDF DIGYGVQWAS 420 LMQELSFRSE GTLSLKITAI ASPSTHDQLE LCLVHENLYL FANEINIKFE FQVLNIDSLN 480 YSSWCIPFDV SEKEAFAVNL PVGSFATFKL PVPSVLHFVK QLSPKIVVSM DRGCDRTDLP 540 LAIHIIHALQ SYSNLLESLN AINMKSDALH KIEKFLFQPG IKRIVTGRFR SPGKTLHWRS 600 LFHSSGFTPV PFSSFTESQA QCVVKRTSLR GYQVEKRQLA LVLSWQRKEL ASVSAWKC

Sequence ? help Back to Top

Protein Sequence Length: 658 aa Download sequence Send to blast

MEHFYHSLQT ISQWRQDSTT ATSSSAGAGS VLLLVQPHIE IGGGGGAAYA CAMDDWESVL  60
SEPLPASSGQ ELSMLHLIMG DVADHSVGGV NKVLQISGGL LPSDVESGSS FGAAEQASGG  120
DSVSQFGTSF MLPNPAFIHC LSFPNNSFTA EKIDTLASNS SPNFLSDIKP SNYHNTVSSS  180
ASNNLGAFFN AKVLVNQHVA HSTENRSFLL PAQQQEHIPL VPPRAKRYNL SQSTGGIPKG  240
WSLDTGQELF LGREQLPCQH PLVFPHNLHQ RPLAGMGVDP NQNTGRDELG QCDQQQQAII  300
DQLYEAAELV ETGNFVLAQA ILARLNHQLS SLNKPFQRAA LYFNEAMESV LHGNDLTSEA  360
APLPFSLIFR IGAYKLFSEI SPLTQFTNFT CNQAVLEVLE GFNRIHIVDF DIGYGVQWAS  420
LMQELSFRSE GTLSLKITAI ASPSTHDQLE LCLVHENLYL FANEINIKFE FQVLNIDSLN  480
YSSWCIPFDV SEKEAFAVNL PVGSFATFKL PVPSVLHFVK QLSPKIVVSM DRGCDRTDLP  540
LAIHIIHALQ SYSNLLESLN AINMKSDALH KIEKFLFQPG IKRIVTGRFR SPGKTLHWRS  600
LFHSSGFTPV PFSSFTESQA QCVVKRTSLR GYQVEKRQLA LVLSWQRKEL ASVSAWKC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-32	317	657	21	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV32850.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011093313.1	0.0	scarecrow-like protein 27
Refseq	XP_011093314.1	0.0	scarecrow-like protein 27
Refseq	XP_022897183.1	0.0	scarecrow-like protein 6
Swissprot	O81316	1e-119	SCL6_ARATH; Scarecrow-like protein 6
TrEMBL	A0A2Z7BF34	0.0	A0A2Z7BF34_9LAMI; Scarecrow-like protein 22-like
STRING	PGSC0003DMT400066799	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6253	22	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-120	GRAS family protein

Publications ? help Back to Top
Bari A,Orazova S,Ivashchenko A miR156- and miR171-binding sites in the protein-coding sequences of several plant genes. Biomed Res Int, 2013. 2013: p. 307145 [PMID:23936788] Xue XY, et al. Interaction between two timing microRNAs controls trichome distribution in Arabidopsis. PLoS Genet., 2014. 10(4): p. e1004266 [PMID:24699192]