PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KZV32806.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 721aa MW: 79343 Da PI: 6.8966 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.5 | 6.3e-20 | 26 | 81 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q+++Le++F+++++p++++r +L+++l+L rq+k+WFqNrR+++k KZV32806.1 26 KKRYHRHTAHQIQRLESMFKECPHPDEKTRNHLSRELNLHPRQIKFWFQNRRTQMK 81 678899***********************************************998 PP | |||||||
2 | START | 177.1 | 1.1e-55 | 225 | 450 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 +a a++el+k+ +a+ep W+kss e++n d++ ++f++ ++ ++ea+r+sgvv+m+ lv ++d + +W e ++ ka t+evis KZV32806.1 225 IAVNAMDELIKLLQANEPIWMKSSadgrEILNLDTYDSIFPRPNShlknpnIRIEASRDSGVVIMNGLALVDMFMDAN-KWVELFPtivsKARTIEVIS 322 67889***********************************998889****99**************************.******99999********* PP TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX. CS START 87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp. 177 sg g+lqlm+ elq+ls lvp R f f+R+++q ++g+w+ivd S d + + ++ s+ ++++lpSg+li++++ng+skvtwveh++ +++ p KZV32806.1 323 SGmlggrsGTLQLMYGELQVLSALVPtRQFFFLRFCQQIEQGSWAIVDLSSDIPHQGSQFTSSFKVHKLPSGCLIQDMPNGYSKVTWVEHWEIEEKAPi 421 **************************************************99999999989999*********************************** PP HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 178 hwllrslvksglaegaktwvatlqrqcek 206 h l+r l++sgla+ga +w++ lqr ce+ KZV32806.1 422 HRLYRELIHSGLAFGAERWLSNLQRICER 450 ***************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.09E-20 | 13 | 83 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.0E-23 | 20 | 87 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.346 | 23 | 83 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.4E-19 | 24 | 87 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.04E-19 | 25 | 84 | No hit | No description |
Pfam | PF00046 | 1.8E-17 | 26 | 81 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 58 | 81 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 49.695 | 215 | 453 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.84E-34 | 216 | 451 | No hit | No description |
CDD | cd08875 | 3.09E-116 | 219 | 449 | No hit | No description |
SMART | SM00234 | 1.3E-48 | 224 | 450 | IPR002913 | START domain |
Pfam | PF01852 | 7.2E-47 | 225 | 450 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 4.8E-5 | 279 | 447 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 1.33E-21 | 472 | 712 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009828 | Biological Process | plant-type cell wall loosening | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 721 aa Download sequence Send to blast |
MEFSSGGGGA GDGSSGGDGS DPHRRKKRYH RHTAHQIQRL ESMFKECPHP DEKTRNHLSR 60 ELNLHPRQIK FWFQNRRTQM KAQHERADNC ALRAENDKIR CENIAIREAL RNVICPSCGG 120 PPVSGDPYFD DQKLRIENAH LKEELDRVSS IAAKYIGRPI SQLPPVQPIH VSSLDLSMAS 180 FGSHGIPGPS LDLDLLPGSS SSVIPNLAFP PMSISDMDKS LMADIAVNAM DELIKLLQAN 240 EPIWMKSSAD GREILNLDTY DSIFPRPNSH LKNPNIRIEA SRDSGVVIMN GLALVDMFMD 300 ANKWVELFPT IVSKARTIEV ISSGMLGGRS GTLQLMYGEL QVLSALVPTR QFFFLRFCQQ 360 IEQGSWAIVD LSSDIPHQGS QFTSSFKVHK LPSGCLIQDM PNGYSKVTWV EHWEIEEKAP 420 IHRLYRELIH SGLAFGAERW LSNLQRICER FACLMVTENS TRDLGGVIPL AEGKRSMMKL 480 AQRMVNNFCA SINPANGQQW TTNTGLNDFE VRATLHKSTD PGQPNGVVLS AAATIWLPTS 540 PQNVFNFFRD ERTRPQWDVL SNQNPVQEVA HIANGSHPGN CISVLRAFNT SQNNMLILQE 600 SCIDSSGALV VYCPVDLPAI NVAMSGEDPS YIPLLPSGFT ISPDGQPDHL QTRGVGGDGA 660 STSSNPGTCG RSSGSLITVV FQILVSSFPS ARMSPESVTT VNNLISNTVH QIKAALNCTT 720 S |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor which acts as positive regulator of drought stress tolerance. Can transactivate CIPK3, NCED3 and ERECTA (PubMed:18451323). Transactivates several cell-wall-loosening protein genes by directly binding to HD motifs in their promoters. These target genes play important roles in coordinating cell-wall extensibility with root development and growth (PubMed:24821957). Transactivates CYP74A/AOS, AOC3, OPR3 and 4CLL5/OPCL1 genes by directly binding to HD motifs in their promoters. These target genes are involved in jasmonate (JA) biosynthesis, and JA signaling affects root architecture by activating auxin signaling, which promotes lateral root formation (PubMed:25752924). Acts as negative regulator of trichome branching (PubMed:16778018, PubMed:24824485). Required for the establishment of giant cell identity on the abaxial side of sepals (PubMed:23095885). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:18451323, ECO:0000269|PubMed:23095885, ECO:0000269|PubMed:24821957, ECO:0000269|PubMed:24824485, ECO:0000269|PubMed:25564655, ECO:0000269|PubMed:25752924}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00232 | DAP | Transfer from AT1G73360 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KZV32806.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011072039.1 | 0.0 | homeobox-leucine zipper protein HDG11 | ||||
Swissprot | Q9FX31 | 0.0 | HDG11_ARATH; Homeobox-leucine zipper protein HDG11 | ||||
TrEMBL | A0A2Z7BLK0 | 0.0 | A0A2Z7BLK0_9LAMI; Uncharacterized protein | ||||
STRING | Migut.O00242.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2490 | 23 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | homeodomain GLABROUS 11 |