PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV32369.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C2H2
Protein Properties Length: 546aa    MW: 60704.3 Da    PI: 9.9809
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV32369.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.6e-05628123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C++C+k F r  nL+ H r H
  KZV32369.1  6 FVCEICNKGFQRDQNLQLHRRGH 28
                89*******************88 PP
2zf-C2H215.55e-0582104123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC +C+k +  +s+ k H++t+
  KZV32369.1  82 WKCDKCSKKYAVQSDWKAHQKTC 104
                 58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.15E-8528No hitNo description
Gene3DG3DSA:3.30.160.601.8E-5528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.949628IPR007087Zinc finger, C2H2
SMARTSM003550.017628IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM00355734777IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.9E-570103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.15E-877103No hitNo description
SMARTSM003559482102IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRTTT EARKRVYICP EPSCVHNNPA  60
RALGDLTGIK KHYSRKHGEK KWKCDKCSKK YAVQSDWKAH QKTCGTREYK CDCGTIFSRR  120
DSFITHRAFC DALAEENSKV MSHGLMSPNL QGQMPELLST MPINANSNTS MEFNNPLKSL  180
QQELVPIPFK PMNIGAAGAM FSSSSGNLFG NPRSMPSTSS GLQLSSNSTP SGYNYHQDNK  240
NIGQVSGSAP NMSATALLQK AAQMGATASN TINSPMMQKS FVSSMAGPDH ISSARPINKI  300
HYDNFQPQNE QQSSPFINGG FPTQLFDNGG GGAGGSVMND MVMYGGMLIG TDQNPVAAAG  360
FLKNYAEIQE DSDQSSAVIQ QGRHNNNNNN NVMARNHTRL MGGGNDMTTV DFLGLGGSRA  420
QNNLHDQRME VEAMNQQRIQ AMHNHFHQQI SHADSDVEKA IVQHILIDDW KNPTPTGTDQ  480
NSKVRAVHIL SEQISKLEQV IHRPNRPHDF RARAGYTLSA RPRNTRARFN IIEPTHLVKR  540
LSKLRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-3578142367Zinc finger protein JACKDAW
5b3h_F3e-3578142367Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV32369.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079713.10.0protein indeterminate-domain 2-like
TrEMBLA0A2Z7BG010.0A0A2Z7BG01_9LAMI; Indeterminate(ID)-domain 2
STRINGPOPTR_0002s20950.11e-179(Populus trichocarpa)
STRINGXP_007163083.11e-179(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.25e-80C2H2 family protein