PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV31685.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | DBB | ||||||||
Protein Properties | Length: 256aa MW: 27939.4 Da PI: 4.4104 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.9 | 3.5e-07 | 11 | 54 | 4 | 41 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 ++C+ ++ fC++++ +lC +C ++H H +v+ KZV31685.1 11 KICDACKTSLPAVFCRQDSAFLCTTCDGNIHAAnelasrHARVS 54 69******99*********************6567777777766 PP | |||||||
2 | zf-B_box | 24.4 | 6e-08 | 54 | 96 | 4 | 40 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvv 40 C+ +e+ +++ C+ + lC++C +H H++ KZV31685.1 54 SLCDVCEQAPASVTCKADAAALCATCDHDIH-TvnplahrHERL 96 68****************************8.446777445555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.381 | 8 | 55 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.2E-9 | 8 | 55 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.8E-5 | 11 | 54 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.31E-4 | 12 | 55 | No hit | No description |
PROSITE profile | PS50119 | 10.722 | 51 | 98 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 7.8E-6 | 54 | 98 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.62E-6 | 55 | 98 | No hit | No description |
SMART | SM00336 | 8.3E-7 | 56 | 98 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MASETWSLTS KICDACKTSL PAVFCRQDSA FLCTTCDGNI HAANELASRH ARVSLCDVCE 60 QAPASVTCKA DAAALCATCD HDIHTVNPLA HRHERLPIIP LFNAASAMRS PPPPSTVMIG 120 DEFSEEEAEA ASWLLNDPSS KLDDESESAL YKSEESLFKN LDPCLDLDLI SYEQKPKNGV 180 MNGKEKYYSS DGVVPVHQCK NEFESGQIPG PVVDGFPTCE VNCPVSNPFM YNFTSQSICQ 240 TVRSSSFILL LFSDLQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV31685.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011082019.1 | 9e-92 | zinc finger protein CONSTANS-LIKE 4-like | ||||
TrEMBL | A0A2Z7BC97 | 0.0 | A0A2Z7BC97_9LAMI; Zinc finger protein CONSTANS-LIKE 4-like | ||||
STRING | Migut.A00403.1.p | 2e-81 | (Erythranthe guttata) | ||||
STRING | Migut.E01434.1.p | 1e-81 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1035 | 23 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24930.1 | 5e-46 | CONSTANS-like 4 |