PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV31351.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family GRAS
Protein Properties Length: 542aa    MW: 61242.8 Da    PI: 6.5965
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV31351.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS453.31.6e-1381725421374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l +lL++cA+a++++d   aq+l+++l++l+s +g+pmqRl ay++e+L a+l++s+s++yk+l ++e +   s e l+++++++e++P++kf+++ aN
  KZV31351.1 172 LNQLLIACAKAITNNDILTAQWLMSELRQLVSVSGEPMQRLGAYMLEGLVAKLSSSGSSIYKSLICKEPA---SFELLSYMHILFEICPYFKFGYMSAN 267
                 5799*****************************************************************9...9************************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  aI ea++ e+r+HiiDf+i+qG QW++L++a+asRp+gpp++RiTg+++ +s   +   l+ +g+rL+k+A++l+vpfef+  +a++  +++le+L +
  KZV31351.1 268 GAIAEAMKDEDRIHIIDFQIGQGSQWISLIRAFASRPGGPPHIRITGIDDFTSAyaRGGGLNIVGRRLSKLAKTLKVPFEFHG-AATSGCEVSLENLGI 365
                 **************************************************998899999************************.899************ PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 +p+EalaVn+++ lhr++desv++e++rd++L++vk+l Pkvv++veqe+++n++ F  rfleal+yy+a+f+s++++lpre+++ri+vE+++l+re+v
  KZV31351.1 366 RPNEALAVNFAFVLHRMPDESVNTENHRDRILRMVKGLHPKVVTLVEQEINTNTAAFYPRFLEALNYYTAMFESIDVTLPREHKARINVEQHCLAREVV 464
                 *************************************************************************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 n+ aceg+er+erhe l+kWr+r+++aGF+p+pls+ +++++k+ll+++ ++ yr+ee++g+l+lgW+dr L++ +aW+
  KZV31351.1 465 NIMACEGTERVERHEPLGKWRSRFSMAGFTPYPLSSLVNATIKTLLENYCNK-YRLEERDGALYLGWMDRDLITSCAWK 542
                 **************************************************66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.138146523IPR005202Transcription factor GRAS
PfamPF035145.5E-136172542IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MQDFEPRRIK SNSSDVLCHQ PVRYLESSCS LPFTFQPLDH HPRYNNNAHN NRYNHSSIQD  60
SQYLYCTLES SSLSAKKDPA MFNFPSEISL SHQESQSCLH HSPETNYGSP SSVSCITEDA  120
NNFRNKLKEL ETVMLGPDIE AYDDYTVLGS MASAEILDSL RQMMEAIPKK DLNQLLIACA  180
KAITNNDILT AQWLMSELRQ LVSVSGEPMQ RLGAYMLEGL VAKLSSSGSS IYKSLICKEP  240
ASFELLSYMH ILFEICPYFK FGYMSANGAI AEAMKDEDRI HIIDFQIGQG SQWISLIRAF  300
ASRPGGPPHI RITGIDDFTS AYARGGGLNI VGRRLSKLAK TLKVPFEFHG AATSGCEVSL  360
ENLGIRPNEA LAVNFAFVLH RMPDESVNTE NHRDRILRMV KGLHPKVVTL VEQEINTNTA  420
AFYPRFLEAL NYYTAMFESI DVTLPREHKA RINVEQHCLA REVVNIMACE GTERVERHEP  480
LGKWRSRFSM AGFTPYPLSS LVNATIKTLL ENYCNKYRLE ERDGALYLGW MDRDLITSCA  540
WK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-6217954125377Protein SCARECROW
5b3h_D1e-6217954125377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV31351.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100624.10.0scarecrow-like protein 21
RefseqXP_011100625.10.0scarecrow-like protein 21
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A2Z7BH910.0A0A2Z7BH91_9LAMI; Uncharacterized protein
STRINGcassava4.1_004951m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68124111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]