PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV30839.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C2H2
Protein Properties Length: 458aa    MW: 50622 Da    PI: 8.4906
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV30839.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.55.4e-065173123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C++C++ F r  nL+ H r+H
  KZV30839.1 51 YVCEICNQGFQRDQNLQMHRRRH 73
                9*********************9 PP
2zf-C2H2163.4e-05128150123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++C+k +  +s++k H++t+
  KZV30839.1 128 WVCEKCSKGYAVQSDYKAHLKTC 150
                 58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.9E-55073IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.77E-55073No hitNo description
SMARTSM003550.00525173IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.975173IPR007087Zinc finger, C2H2
PROSITE patternPS0002805373IPR007087Zinc finger, C2H2
SMARTSM0035517092122IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.7E-5119149IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.77E-5123148No hitNo description
SMARTSM0035560128155IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MLGKSDNPSP PSEPFSSSEI SKRKRRPAGT PDPDAEVISL SPKTLLESDR YVCEICNQGF  60
QRDQNLQMHR RRHKVPWKLL KRDTPMARKR VYVCPEPSCL HHDPCHALGD LVGIKKHFRR  120
KHSNQKQWVC EKCSKGYAVQ SDYKAHLKTC GTRGHSCDCG RVFSRVESFI EHQDACSIGQ  180
LRSESHPIQL PTPPPLMAVA ACLSRTASSP SPSSDTNLSV APRPSSSALP RQIDPILFNN  240
FADTICGGGT GTTTSRYPSL ELQLLSKKLD EDQSTQLQLS IGSSEMGGRS DTEGRGTTSV  300
NHRCSPPGTS STIYDQLPSA AEAVAAERLK NLVQEQLRIA LAEKAYADEA RQEAKRQIQL  360
AEHQFADAKR IRQQAIAELE KAQALKEHAT EQVNSIMLQI TCNSCKQKFQ QSHAASSSWP  420
PLLQFAEASS SSCENSLGMS NISAALREWD FKKSSDQN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-18125176455Zinc finger protein JACKDAW
5b3h_F4e-18125176455Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV30839.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073161.10.0protein SHOOT GRAVITROPISM 5-like
SwissprotF4IPE31e-142IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5
TrEMBLA0A2Z7BBQ60.0A0A2Z7BBQ6_9LAMI; Uncharacterized protein
STRINGAquca_002_01252.10.0(Aquilegia coerulea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10222482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.11e-141C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kim JY,Ryu JY,Baek K,Park CM
    High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis.
    New Phytol., 2016. 209(1): p. 265-79
    [PMID:26256266]
  3. Ryu JY,Kim JY,Park CM
    Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1093715
    [PMID:26452406]
  4. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  5. Shi H, et al.
    Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
    J. Pineal Res., 2018. 65(2): p. e12494
    [PMID:29607541]