PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV30587.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | C2H2 | ||||||||
Protein Properties | Length: 164aa MW: 18470.5 Da PI: 8.138 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.8 | 4.1e-05 | 38 | 61 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ykC++C+++F++ L H ++ H KZV30587.1 38 YKCGHCPEVFNSGRALAYHRSSvH 61 9******************99988 PP | |||||||
2 | zf-C2H2 | 19.2 | 3.2e-06 | 80 | 102 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ Cgk F ++s + H+++H KZV30587.1 80 YICEQCGKEFQSPSAVRGHMSVH 102 89*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.25E-7 | 36 | 102 | No hit | No description |
SMART | SM00355 | 0.023 | 38 | 61 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 0.014 | 38 | 63 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.325 | 38 | 66 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 40 | 61 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.2E-5 | 79 | 103 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 9.4E-4 | 80 | 102 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 2.3E-4 | 80 | 104 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.448 | 80 | 107 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 82 | 102 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MAEEDRRDLA LGDDVDSAAA EEDTASTIVA AEDAIKGYKC GHCPEVFNSG RALAYHRSSV 60 HCESKKLKFM QTNNSEIGQY ICEQCGKEFQ SPSAVRGHMS VHRSRYRRWT KPPTKQHHIE 120 NPPQNQELLA DPKSDRKWTA AGSNQNCTET TKNIAGNYKR KKMD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV30587.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2Z7BF62 | 1e-122 | A0A2Z7BF62_9LAMI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2050 | 22 | 63 |