PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV30476.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

G2-like

Protein Properties

Length: 333aa MW: 36083.7 Da PI: 8.8617

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV30476.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.2	5.6e-31	192	247	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rF +a++qLGGs+ AtPk+i+elmkv+gLt+++vkSHLQkYRl+ KZV30476.1 192 KARRCWSPELHRRFEQALQQLGGSHAATPKQIRELMKVDGLTNDEVKSHLQKYRLH 247 68****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.44	189	249	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-28	190	250	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.55E-18	190	250	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.4E-26	192	247	IPR006447	Myb domain, plants
Pfam	PF00249	1.2E-7	194	245	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MSRLYPCFRG RAKQQLSGTT TEYNLRGQSE CSEQTSSPIF EEFIPLKRAS FHSDGEEEES 60 QNLKCGDGVQ SDKINGNEKN SKKSDWLRYV QLWNETPDPS SKEDSSRKVA VVEVNRNRGS 120 SDGAGGGGGA FHPFKKEKSL GIDGSTKNKT ESGDQPKSES VPPASTSSTA DTGGESGGAS 180 KKEEKGGESQ RKARRCWSPE LHRRFEQALQ QLGGSHAATP KQIRELMKVD GLTNDEVKSH 240 LQKYRLHMRR PGPTIQNNQH PQAPQFVVVG GIWVRPEYGA AAGDATAAVN GIYAPVASLP 300 QPFQGTISTH SPKQSEGGAQ QLHSPATSSS TFV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-13	192	245	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-13	192	245	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-13	192	245	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-13	192	245	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250\|UniProtKB:Q9FX67}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV30476.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011077211.1	1e-122	myb family transcription factor EFM-like
Swissprot	Q9FPE8	8e-68	HHO3_ARATH; Transcription factor HHO3
TrEMBL	A0A2Z7B8W2	0.0	A0A2Z7B8W2_9LAMI; Uncharacterized protein
STRING	VIT_01s0011g03110.t01	1e-103	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5219	24	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25550.1	1e-61	G2-like family protein

Publications ? help Back to Top
Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]